Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bump to 24.1 - Single-container setup #607

Merged
merged 24 commits into from
Nov 12, 2024
Merged

bump to 24.1 - Single-container setup #607

Changes from 1 commit
Commits
Show all changes
24 commits
Select commit Hold shift + click to select a range
4902410
bump to 24.1
jyotipm29 Oct 30, 2024
c664506
small fixes
jyotipm29 Oct 31, 2024
26d0cca
added tusd role
jyotipm29 Nov 1, 2024
5dae32d
added flower role
jyotipm29 Nov 1, 2024
40e479e
added redis role
jyotipm29 Nov 2, 2024
bf03c59
remove default channel from conda
bgruening Nov 2, 2024
a2784aa
added slurm role and some refactorings
jyotipm29 Nov 2, 2024
86375d4
added condor role
jyotipm29 Nov 3, 2024
6305e34
added proftpd role
jyotipm29 Nov 3, 2024
cb21b29
install conda from conda-forge (miniforge)
jyotipm29 Nov 3, 2024
b5a00cc
added cvmfs provision playbook and removed g++
jyotipm29 Nov 4, 2024
b8bc58c
added rabbitmq role
jyotipm29 Nov 4, 2024
298ee36
moved all tasks (except nginx) from galaxyextras repo
jyotipm29 Nov 5, 2024
afeaf9b
add docker role and enabled role installation via ansible-galaxy
jyotipm29 Nov 5, 2024
62e0b76
added nginx, certbot, self_signed_certs role and removed galaxyextras…
jyotipm29 Nov 7, 2024
83c8499
fix some strange errors only happening for me
bgruening Nov 7, 2024
7ef12e0
added multi-stage build in Dockerfile
jyotipm29 Nov 9, 2024
11dc49f
update dockerfile
jyotipm29 Nov 9, 2024
3b9f9a0
migrate from galaxy-central to "galaxy"
bgruening Nov 9, 2024
d2dc319
Merge pull request #1 from bgruening/change_root_dir
jyotipm29 Nov 9, 2024
4739bb8
migrate remaining galaxy-central, added dive tests, some fixes and op…
jyotipm29 Nov 11, 2024
97c3de6
changed execution order in startup and added test for data persistence
jyotipm29 Nov 11, 2024
a2c7267
fix startup issues
bgruening Nov 12, 2024
93d57b3
update DinD
bgruening Nov 12, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 1 addition & 2 deletions galaxy/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -176,12 +176,11 @@ RUN mkdir -p /shed_tools $GALAXY_CONFIG_TUS_UPLOAD_STORE \
&& chown $GALAXY_USER:$GALAXY_USER /shed_tools $GALAXY_CONFIG_TUS_UPLOAD_STORE \
&& ln -s /tool_deps/ $EXPORT_DIR/tool_deps \
# Configure Galaxy to use the Tool Shed
&& chown $GALAXY_USER:$GALAXY_USER $EXPORT_DIR/tool_deps \
&& chown $GALAXY_USER:$GALAXY_USER $EXPORT_DIR/tool_deps $GALAXY_VIRTUAL_ENV -R \
jyotipm29 marked this conversation as resolved.
Show resolved Hide resolved
&& ansible-playbook /ansible/provision.yml \
--extra-vars galaxy_server_dir=$GALAXY_ROOT_DIR \
--extra-vars galaxy_venv_dir=$GALAXY_VIRTUAL_ENV \
--extra-vars galaxy_logs_dir=$GALAXY_LOGS_DIR \
--extra-vars galaxy_user_name=$GALAXY_USER \
--extra-vars galaxy_config_file=$GALAXY_CONFIG_FILE \
--extra-vars galaxy_config_dir=$GALAXY_CONFIG_DIR \
--extra-vars gravity_config_file=$GRAVITY_CONFIG_FILE \
Expand Down