Saim momin12 tools/cellpose

tools/cellpose/cellpose.xml

@@ -1,8 +1,8 @@
-<tool id="cellpose" name="Run generalist cell and nucleus segmentation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
+<tool id="cellpose" name="Run generalist cell and nucleus segmentation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.02">
     <description>with Cellpose</description>
     <macros>
         <token name="@TOOL_VERSION@">3.0.10</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
         <xml name="channel">
             <option value="0" selected="true">grayscale/None</option>
             <option value="1">red</option>
@@ -76,66 +76,66 @@
             <param name="model_type" value="cyto"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="3"/>
-            <output name="cp_mask" file="img02_cp_masks_cyto.tif" compare="sim_size" delta_frac="0.1"/>
-            <output name="cp_segm" file="img02_cp_segm_cyto.png" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_cyto.tif" compare="image_diff"/>
+            <output name="cp_segm" file="img02_cp_segm_cyto.png" compare="image_diff"/>
         </test>
         <test expect_num_outputs="2">
             <param name="img_in" value="img02.png"/>
             <param name="model_type" value="cyto2"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="3"/>
-            <output name="cp_mask" file="img02_cp_masks_cyto2.tif" compare="sim_size" delta_frac="0.1"/>
-            <output name="cp_segm" file="img02_cp_segm_cyto2.png" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_cyto2.tif" compare="image_diff"/>
+            <output name="cp_segm" file="img02_cp_segm_cyto2.png" compare="image_diff"/>
         </test>
         <test expect_num_outputs="2">
             <param name="img_in" value="img02.png"/>
             <param name="model_type" value="cyto3"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="3"/>
-            <output name="cp_mask" file="img02_cp_masks_cyto3.tif" compare="sim_size" delta_frac="0.1"/>
-            <output name="cp_segm" file="img02_cp_segm_cyto3.png" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_cyto3.tif" compare="image_diff"/>
+            <output name="cp_segm" file="img02_cp_segm_cyto3.png" compare="image_diff"/>
         </test>
         <test expect_num_outputs="2">
             <param name="img_in" value="img02.png"/>
             <param name="model_type" value="nuclei"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="3"/>
-            <output name="cp_mask" file="img02_cp_masks_nuclei.tif" compare="sim_size" delta_frac="0.1"/>
-            <output name="cp_segm" file="img02_cp_segm_nuclei.png" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_nuclei.tif" compare="image_diff"/>
+            <output name="cp_segm" file="img02_cp_segm_nuclei.png" compare="image_diff"/>
         </test>
         <test expect_num_outputs="2">
             <param name="img_in" value="img02.png"/>
             <param name="model_type" value="cyto"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="1"/>
-            <output name="cp_mask" file="img02_cp_masks_chan.tif" compare="sim_size" delta_frac="0.1"/>
-            <output name="cp_segm" file="img02_cp_segm_chan.png" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_chan.tif" compare="image_diff"/>
+            <output name="cp_segm" file="img02_cp_segm_chan.png" compare="image_diff"/>
         </test>
         <test expect_num_outputs="2">
             <param name="img_in" value="img02.png"/>
             <param name="model_type" value="cyto"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="3"/>
             <param name="diameter" value="50"/>
-            <output name="cp_mask" file="img02_cp_masks_diameter.tif" compare="sim_size" delta_frac="0.1"/>
-            <output name="cp_segm" file="img02_cp_segm_diameter.png" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_diameter.tif" compare="image_diff"/>
+            <output name="cp_segm" file="img02_cp_segm_diameter.png" compare="image_diff"/>
         </test>
         <test expect_num_outputs="2">
             <param name="img_in" value="img02.png"/>
             <param name="use_gpu" value="true"/>
             <param name="model_type" value="cyto"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="3"/>
-            <output name="cp_mask" file="img02_cp_masks_gpu.tif" compare="sim_size" delta_frac="0.1"/>
-            <output name="cp_segm" file="img02_cp_segm_gpu.png" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_gpu.tif" compare="image_diff"/>
+            <output name="cp_segm" file="img02_cp_segm_gpu.png" compare="image_diff"/>
         </test>
         <test expect_num_outputs="1">
             <param name="img_in" value="img02.png"/>
             <param name="model_type" value="cyto"/>
             <param name="chan" value="2"/>
             <param name="chan2" value="3"/>
             <param name="show_segmentation" value="false"/>
-            <output name="cp_mask" file="img02_cp_masks_cyto.tif" compare="sim_size" delta_frac="0.1"/>
+            <output name="cp_mask" file="img02_cp_masks_cyto.tif" compare="image_diff"/>
         </test>
     </tests>
     <help>