JBrowse2: Revert from pif indexes for paf #1522
Merged
+24
−15
Commits on Sep 1, 2023
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adding first tested and working generated tool from https://github.co…
…m/fubar2/nftoolmaker It actually does work. Sort of. Hope this is useful to someone.
Commits on Sep 2, 2023
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fixes suggested by bgruening for the PR - all adjustments will now ap…
…ply to all future generated tools :)
Commits on Sep 4, 2023
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add yara mapper ToolFactory - NOT from nf-core.
Allows single ended fastq or fasta to be mapped, or a pair of forward and reverse - both must be fastq
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Commits on Sep 5, 2023
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fix profile="22.05" - need to update galaxyxml to fix this and the st…
…dio replacement...
Commits on Dec 14, 2023
Commits on Jan 19, 2024
Commits on Feb 1, 2024
Commits on Feb 4, 2024
Commits on Mar 5, 2024
Commits on Jun 5, 2024
Commits on Jun 15, 2024
Commits on Oct 7, 2024
Commits on Oct 8, 2024
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Idiotic sort error generates broken pif indexes.
Pity the built in fails in biocontainers.
Commits on Oct 13, 2024
Commits on Oct 14, 2024
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return to using paf unindexed until figure out why the jbrowse utilit…
…y is broken tabix does not do this.
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