forked from spacetelescope/jwql
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge branch 'develop' into dark-monitor-integ-limits-and-dates
- Loading branch information
Showing
89 changed files
with
5,416 additions
and
3,514 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
|
|
||
| version: 2 | ||
| updates: | ||
| - package-ecosystem: "pip" | ||
| directory: "/" | ||
| schedule: | ||
| interval: "monthly" |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -2,78 +2,53 @@ name: JWQL CI | |
|
|
||
| on: [push, pull_request] | ||
|
|
||
| jobs: | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| JWQL-CI: | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
|
|
||
| name: Python - ${{ matrix.python-version }} | ||
| jobs: | ||
| check: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: "3.x" | ||
| - run: pip install bandit | ||
| - run: bandit ./jwql/ -c .bandit | ||
|
|
||
| test: | ||
| name: test (Python ${{ matrix.python-version }}, ${{ matrix.os }}) | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| max-parallel: 5 | ||
| fail-fast: false | ||
| matrix: | ||
| os: [ubuntu-latest, macos-latest] | ||
| python-version: [3.8, 3.9] | ||
| python-version: [3.9, "3.10"] | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| - uses: conda-incubator/setup-miniconda@v2 | ||
| - uses: mamba-org/provision-with-micromamba@v15 | ||
| with: | ||
| activate-environment: jwql-${{ matrix.python-version }} | ||
| environment-file: ./environment_python_${{ matrix.python-version }}.yml | ||
| cache-env: true | ||
| cache-downloads: true | ||
|
|
||
| - name: Bandit Check | ||
| uses: jpetrucciani/bandit-check@master | ||
| with: | ||
| path: "./jwql/" | ||
| bandit_flags: "-c .bandit" | ||
| continue-on-error: false | ||
| if: runner.os == 'Linux' | ||
| - run: pip install -e .[test] | ||
|
|
||
| - name: Start Redis | ||
| uses: supercharge/[email protected] | ||
| - run: conda env export | ||
|
|
||
| - uses: supercharge/[email protected] | ||
| with: | ||
| redis-version: 5.0 | ||
| if: runner.os == 'Linux' | ||
|
|
||
| - name: Build jwql conda environment and run tests | ||
| shell: bash -l {0} | ||
| run: | | ||
| echo "Setting useful environment variables:" | ||
| echo " " | ||
| export PYTHONVERSION=${{ matrix.python-version }} | ||
| export MAJOR="$(echo $PYTHONVERSION | head -c 1)" | ||
| export MINOR="$(echo $PYTHONVERSION | tail -c 2)" | ||
| echo "PYTHONVERSION: $PYTHONVERSION" | ||
| echo " " | ||
| echo "Installing jwql conda environment" | ||
| echo " " | ||
| cd $RUNNER_WORKSPACE/ | ||
| cd jwql/ | ||
| $CONDA/bin/conda env update -f environment_python_${MAJOR}_${MINOR}.yml -n jwql-${{ matrix.python-version }} | ||
| echo " " | ||
| echo "Installing jwql package" | ||
| echo " " | ||
| python setup.py develop | ||
| echo " " | ||
| echo "Testing package installation" | ||
| echo " " | ||
| python -c "import jwql; print('Version: ' + jwql.__version__); print('Path: ' + jwql.__path__[0])" | ||
| # echo " " | ||
| # echo "Reinstall numpy to fix numpy.core.multiarray error" | ||
| # echo " " | ||
| pip install -U numpy | ||
| echo " " | ||
| echo "The conda environment being used:" | ||
| echo " " | ||
| $CONDA/bin/conda env export | ||
| - run: python -c "import jwql; print('Version ' + jwql.__version__); print('Path ' + jwql.__path__[0])" | ||
|
|
||
| echo " " | ||
| echo "Running pytests" | ||
| echo " " | ||
| pytest jwql/tests/ | ||
| - run: pytest jwql/tests/ | ||
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.