feat: add new patient entries for various datasets in nbia.yaml #24

	name: Release Data

	on:
	push:
	branches:
	- main
	- "*"
	tags:
	- "v."

	permissions:
	contents: write

	jobs:
	Run-Pipeline:
	runs-on: ubuntu-latest
	timeout-minutes: 15

	env:
	NBIA_USERNAME: ${{ secrets.NBIA_USERNAME }}
	NBIA_PASSWORD: ${{ secrets.NBIA_PASSWORD }}

	steps:
	- uses: actions/checkout@v4

	- name: Display environment variables
	run: \|
	echo "NBIA_USERNAME is $NBIA_USERNAME"
	if [ -z "$NBIA_PASSWORD" ]; then
	echo "NBIA_PASSWORD is not set"
	else
	echo "NBIA_PASSWORD is set"
	fi

	- name: Install Pixi
	uses: prefix-dev/[email protected]
	with:
	environments: "default"
	pixi-version: v0.40.0
	cache: true
	locked: false

	- name: Run Snakemake
	run: \|
	pixi run snake

	- name: Combine Markdown files
	run: \|
	# Combine all Markdown files into one with a newline after each file's content
	combined_file="results/combined_summary.md"
	find results -name "*_summary.md" -exec sh -c 'cat {} && echo ""' \; > "$combined_file"
	echo "Combined Markdown written to $combined_file"
	cat "$combined_file"

	- name: Release
	uses: softprops/action-gh-release@v2
	if: startsWith(github.ref, 'refs/tags/')
	with:
	files: \|
	./results/*.tar.gz
	body_path: results/combined_summary.md
	make_latest: true
	# body: \|
	# $(cat results/combined_summary.md)

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