more fixes in compliance with updated context

bids-standard · Sep 4, 2023 · 4edd71b · 4edd71b
1 parent 2f9adbc
commit 4edd71b
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Showing 6 changed files with 8 additions and 8 deletions.
diff --git a/bids_prov/spm/spm_parser.py b/bids_prov/spm/spm_parser.py
@@ -166,7 +166,7 @@ def get_entities_from_ext_config(conf_dic: dict, activity_name: str, activity_id
     for activity in conf_dic.keys():
         if activity in activity_name:
             # {'name': 'segment', 'outputs': ['c1xxx.nii.gz','c2xxx.nii.gz']}
-            # act_preproc = next((activity for activity in records["prov:Activity"] if activity['@id'] ==
+            # act_preproc = next((activity for activity in records["Activities"] if activity['@id'] ==
             # activity_id), None)
             for output in conf_dic[activity]['outputs']:
                 name = conf_dic[activity]['name']
@@ -293,7 +293,7 @@ def get_records(task_groups: dict, agent_id: str, verbose=False) -> dict:
     Returns
     -------
     dict[str, list]
-        records : dict with key "@context", ... "Records":{"prov:Agent": ..."prov:Activity":..."Entities":....}
+        records : dict with key "@context", ... "Records":{"prov:Agent": ..."Activities":..."Entities":....}
 
     """
 

diff --git a/bids_prov/tests/samples_test/batch_example_spm_ref.jsonld b/bids_prov/tests/samples_test/batch_example_spm_ref.jsonld
@@ -12,7 +12,7 @@
         "version": "SPM12r7224"
       }
     ],
-    "prov:Activity": [
+    "Activities": [
       {
         "@id": "urn:3f372617-f0ba-4f3a-86f0-ce2ea6ec39c1",
         "Label": "Move file",

diff --git a/bids_prov/tests/samples_test/partial_conjunction.jsonld b/bids_prov/tests/samples_test/partial_conjunction.jsonld
@@ -12,7 +12,7 @@
         "version": "SPM12r7224"
       }
     ],
-    "prov:Activity": [
+    "Activities": [
       {
         "@id": "urn:3f372617-f0ba-4f3a-86f0-ce2ea6ec39c1",
         "Label": "Move file",

diff --git a/bids_prov/tests/samples_test/partial_conjunction_ref.jsonld b/bids_prov/tests/samples_test/partial_conjunction_ref.jsonld
@@ -12,7 +12,7 @@
         "version": "SPM12r7224"
       }
     ],
-    "prov:Activity": [
+    "Activities": [
       {
         "@id": "urn:3f372617-f0ba-4f3a-86f0-ce2ea6ec39c1",
         "Label": "Move file",

diff --git a/bids_prov/tests/test_spm_parser.py b/bids_prov/tests/test_spm_parser.py
@@ -117,7 +117,7 @@ def test_get_records_copy_attributes():
                                    ]
                        )
     recs = get_records(task_groups, str(uuid.uuid4()))
-    attrs = [activity["parameters"] for activity in recs["prov:Activity"]]
+    attrs = [activity["parameters"] for activity in recs["Activities"]]
     assert "action.copyto" in json.dumps(attrs)
 
 
@@ -126,7 +126,7 @@ def test_get_records_attrs():
                                    ".fwhm = 5;", ]
                        )
     recs = get_records(task_groups, "agentUUID")
-    attrs = [activity["parameters"] for activity in recs["prov:Activity"]]
+    attrs = [activity["parameters"] for activity in recs["Activities"]]
     assert "4" in json.dumps(attrs)
 
 

diff --git a/bids_prov/utils.py b/bids_prov/utils.py
@@ -29,7 +29,7 @@ def get_default_graph(label: str, context_url: str = CONTEXT_URL, soft_ver: str
                            "version": soft_ver
                        }
                    ],
-                   "prov:Activity": [],
+                   "Activities": [],
                    "Entities": [],
                },
            }, agent_id