automated nidm example computation from github action

bids-standard · Sep 28, 2023 · 52b11c9 · 52b11c9
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diff --git a/examples/from_parsers/afni/afni_alt_onesided_proc.jsonld b/examples/from_parsers/afni/afni_alt_onesided_proc.jsonld
diff --git a/examples/from_parsers/afni/afni_alt_onesided_proc.png b/examples/from_parsers/afni/afni_alt_onesided_proc.png
diff --git a/examples/from_parsers/afni/afni_alt_onesided_proc.sub_001 b/examples/from_parsers/afni/afni_alt_onesided_proc.sub_001
@@ -323,7 +323,7 @@ echo "-- GCOR = `cat out.gcor.1D`"
 
 # --------------------------------------------------------
 # compute sum of non-baseline regressors from the X-matrix
-# (use 1d_tool.py to get list of regressor columns)
+# (use 1d_tool.py to get list of regressor colums)
 set reg_cols = `1d_tool.py -infile X.nocensor.xmat.1D -show_indices_interest`
 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D"[$reg_cols]"
 

diff --git a/examples/from_parsers/afni/afni_alt_onesided_proc_block.jsonld b/examples/from_parsers/afni/afni_alt_onesided_proc_block.jsonld
diff --git a/examples/from_parsers/afni/afni_alt_onesided_proc_block.png b/examples/from_parsers/afni/afni_alt_onesided_proc_block.png
diff --git a/examples/from_parsers/afni/afni_bi_sided_t_test_proc.jsonld b/examples/from_parsers/afni/afni_bi_sided_t_test_proc.jsonld
diff --git a/examples/from_parsers/afni/afni_bi_sided_t_test_proc.png b/examples/from_parsers/afni/afni_bi_sided_t_test_proc.png
diff --git a/examples/from_parsers/afni/afni_bi_sided_t_test_proc.sub_001 b/examples/from_parsers/afni/afni_bi_sided_t_test_proc.sub_001
@@ -323,7 +323,7 @@ echo "-- GCOR = `cat out.gcor.1D`"
 
 # --------------------------------------------------------
 # compute sum of non-baseline regressors from the X-matrix
-# (use 1d_tool.py to get list of regressor columns)
+# (use 1d_tool.py to get list of regressor colums)
 set reg_cols = `1d_tool.py -infile X.nocensor.xmat.1D -show_indices_interest`
 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D"[$reg_cols]"
 

diff --git a/examples/from_parsers/afni/afni_bi_sided_t_test_proc_block.jsonld b/examples/from_parsers/afni/afni_bi_sided_t_test_proc_block.jsonld
diff --git a/examples/from_parsers/afni/afni_bi_sided_t_test_proc_block.png b/examples/from_parsers/afni/afni_bi_sided_t_test_proc_block.png
diff --git a/examples/from_parsers/afni/afni_clustconn_18_proc.jsonld b/examples/from_parsers/afni/afni_clustconn_18_proc.jsonld
diff --git a/examples/from_parsers/afni/afni_clustconn_18_proc.png b/examples/from_parsers/afni/afni_clustconn_18_proc.png
diff --git a/examples/from_parsers/afni/afni_clustconn_18_proc.sub_001 b/examples/from_parsers/afni/afni_clustconn_18_proc.sub_001
@@ -323,7 +323,7 @@ echo "-- GCOR = `cat out.gcor.1D`"
 
 # --------------------------------------------------------
 # compute sum of non-baseline regressors from the X-matrix
-# (use 1d_tool.py to get list of regressor columns)
+# (use 1d_tool.py to get list of regressor colums)
 set reg_cols = `1d_tool.py -infile X.nocensor.xmat.1D -show_indices_interest`
 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D"[$reg_cols]"
 

diff --git a/examples/from_parsers/afni/afni_clustconn_18_proc_block.jsonld b/examples/from_parsers/afni/afni_clustconn_18_proc_block.jsonld
diff --git a/examples/from_parsers/afni/afni_clustconn_18_proc_block.png b/examples/from_parsers/afni/afni_clustconn_18_proc_block.png
diff --git a/examples/from_parsers/afni/afni_clustconn_26_proc.jsonld b/examples/from_parsers/afni/afni_clustconn_26_proc.jsonld
diff --git a/examples/from_parsers/afni/afni_clustconn_26_proc.png b/examples/from_parsers/afni/afni_clustconn_26_proc.png
diff --git a/examples/from_parsers/afni/afni_clustconn_26_proc.sub_001 b/examples/from_parsers/afni/afni_clustconn_26_proc.sub_001
@@ -323,7 +323,7 @@ echo "-- GCOR = `cat out.gcor.1D`"
 
 # --------------------------------------------------------
 # compute sum of non-baseline regressors from the X-matrix
-# (use 1d_tool.py to get list of regressor columns)
+# (use 1d_tool.py to get list of regressor colums)
 set reg_cols = `1d_tool.py -infile X.nocensor.xmat.1D -show_indices_interest`
 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D"[$reg_cols]"
 

diff --git a/examples/from_parsers/afni/afni_clustconn_26_proc_block.jsonld b/examples/from_parsers/afni/afni_clustconn_26_proc_block.jsonld
diff --git a/examples/from_parsers/afni/afni_clustconn_26_proc_block.png b/examples/from_parsers/afni/afni_clustconn_26_proc_block.png
diff --git a/examples/from_parsers/afni/afni_con_f_proc.jsonld b/examples/from_parsers/afni/afni_con_f_proc.jsonld
diff --git a/examples/from_parsers/afni/afni_con_f_proc.png b/examples/from_parsers/afni/afni_con_f_proc.png
diff --git a/examples/from_parsers/afni/afni_con_f_proc.sub_001 b/examples/from_parsers/afni/afni_con_f_proc.sub_001
@@ -323,7 +323,7 @@ echo "-- GCOR = `cat out.gcor.1D`"
 
 # --------------------------------------------------------
 # compute sum of non-baseline regressors from the X-matrix
-# (use 1d_tool.py to get list of regressor columns)
+# (use 1d_tool.py to get list of regressor colums)
 set reg_cols = `1d_tool.py -infile X.nocensor.xmat.1D -show_indices_interest`
 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D"[$reg_cols]"
 

diff --git a/examples/from_parsers/afni/afni_con_f_proc_block.jsonld b/examples/from_parsers/afni/afni_con_f_proc_block.jsonld
diff --git a/examples/from_parsers/afni/afni_con_f_proc_block.png b/examples/from_parsers/afni/afni_con_f_proc_block.png
diff --git a/examples/from_parsers/afni/afni_default_proc.jsonld b/examples/from_parsers/afni/afni_default_proc.jsonld
diff --git a/examples/from_parsers/afni/afni_default_proc.png b/examples/from_parsers/afni/afni_default_proc.png
diff --git a/examples/from_parsers/afni/afni_default_proc.sub_001 b/examples/from_parsers/afni/afni_default_proc.sub_001
@@ -325,7 +325,7 @@ echo "-- GCOR = `cat out.gcor.1D`"
 
 # --------------------------------------------------------
 # compute sum of non-baseline regressors from the X-matrix
-# (use 1d_tool.py to get list of regressor columns)
+# (use 1d_tool.py to get list of regressor colums)
 set reg_cols = `1d_tool.py -infile X.nocensor.xmat.1D -show_indices_interest`
 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D"[$reg_cols]"
 

diff --git a/examples/from_parsers/afni/afni_default_proc_block.jsonld b/examples/from_parsers/afni/afni_default_proc_block.jsonld
diff --git a/examples/from_parsers/afni/afni_default_proc_block.png b/examples/from_parsers/afni/afni_default_proc_block.png