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more fixes in compliance with updated context
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cmaumet committed Sep 4, 2023
1 parent 2f9adbc commit df51207
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Showing 11 changed files with 297 additions and 294 deletions.
224 changes: 112 additions & 112 deletions bids_prov/afni/description_functions.json
Original file line number Diff line number Diff line change
@@ -1,168 +1,168 @@
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}
]
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