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Merge pull request #399 from Remi-Gau/ds116_cleanup
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[MAINT] ds116 cleanup
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effigies authored Aug 31, 2023
2 parents e857597 + 101afd6 commit be35808
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Showing 103 changed files with 18 additions and 249 deletions.
18 changes: 18 additions & 0 deletions ds116/code/clean_events.py
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import pandas as pd
from pathlib import Path
from rich import print

root = Path(__file__).parent.parent

# list event.tsv

events_tsv = root.glob("sub-*/func/*task-*_events.tsv")

for event in events_tsv:
# replace "n/a" with "NaN"
df = pd.read_csv(event, sep="\t", na_values="n/a")
print(df)
# # remove rows with NaN in the "onset" column
df = df.dropna(subset=["onset"])
# save replacing NaN with "n/a" and with 3 decimal places
df.to_csv(event, sep="\t", na_rep="n/a", float_format="%.3f", index=False)
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
316.180 0.200 auditory standard stimulus presentation 0.000 standard n/a
318.430 0.200 auditory standard stimulus presentation 0.000 standard n/a
321.260 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 6.728 0 standard
n/a n/a n/a 8.747 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
311.700 0.200 auditory standard stimulus presentation 0.000 standard n/a
314.148 0.200 auditory standard stimulus presentation 0.000 standard n/a
316.780 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.492 0 standard
n/a n/a n/a 7.907 0 standard
n/a n/a n/a 9.942 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
317.789 0.200 auditory standard stimulus presentation 0.000 standard n/a
319.824 0.200 auditory oddball stimulus presentation 1.000 target n/a
319.824 0.354 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
n/a n/a n/a 5.857 0 standard
n/a n/a n/a 8.074 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
305.524 0.410 behavioral response time following visual oddball stimulus onset 1.000 target n/a
308.120 0.200 visual standard stimulus presentation 0.000 standard n/a
310.521 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.643 0 standard
n/a n/a n/a 7.457 0 standard
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Expand Up @@ -146,5 +146,3 @@ onset duration trial_type Response Stimulus response_time
315.391 0.200 visual standard stimulus presentation 0.000 standard n/a
317.593 0.200 visual standard stimulus presentation 0.000 standard n/a
319.594 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 6.371 0 standard
n/a n/a n/a 8.589 0 standard
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Expand Up @@ -148,6 +148,3 @@ onset duration trial_type Response Stimulus response_time
307.638 0.200 visual oddball stimulus presentation 1.000 target n/a
307.638 0.426 behavioral response time following visual oddball stimulus onset 1.000 target n/a
309.641 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.154 0 standard
n/a n/a n/a 7.966 0 standard
n/a n/a n/a 9.985 0 standard
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Expand Up @@ -144,5 +144,3 @@ onset duration trial_type Response Stimulus response_time
316.764 0.200 auditory oddball stimulus presentation 1.000 target n/a
316.764 0.538 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
318.817 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.941 1 standard
n/a n/a n/a 8.356 1 standard
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Expand Up @@ -147,6 +147,3 @@ onset duration trial_type Response Stimulus response_time
315.160 0.200 auditory standard stimulus presentation 0.000 standard n/a
318.205 0.200 auditory standard stimulus presentation 0.000 standard n/a
320.654 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.015 0 standard
n/a n/a n/a 7.232 0 standard
n/a n/a n/a 9.268 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
317.538 0.200 auditory standard stimulus presentation 0.000 standard n/a
319.788 0.200 auditory standard stimulus presentation 0.000 standard n/a
322.832 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.677 0 standard
n/a n/a n/a 7.490 0 standard
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Expand Up @@ -143,5 +143,3 @@ onset duration trial_type Response Stimulus response_time
307.182 0.200 visual standard stimulus presentation 0.000 standard n/a
310.177 0.200 visual oddball stimulus presentation 1.000 target n/a
310.177 0.444 behavioral response time following visual oddball stimulus onset 1.000 target n/a
n/a n/a n/a 4.897 0 standard
n/a n/a n/a 7.908 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
306.715 0.200 visual standard stimulus presentation 0.000 standard n/a
309.711 0.200 visual oddball stimulus presentation 1.000 target n/a
309.711 0.376 behavioral response time following visual oddball stimulus onset 1.000 target n/a
n/a n/a n/a 4.826 0 standard
n/a n/a n/a 7.440 0 standard
n/a n/a n/a 9.856 1 target
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
311.990 0.200 visual oddball stimulus presentation 1.000 target n/a
311.990 0.340 behavioral response time following visual oddball stimulus onset 1.000 target n/a
314.787 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.541 0 standard
n/a n/a n/a 7.552 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
323.984 0.200 auditory standard stimulus presentation 0.000 standard n/a
326.020 0.369 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
326.020 0.200 auditory oddball stimulus presentation 1.000 target n/a
n/a n/a n/a 4.936 0 standard
n/a n/a n/a 7.948 0 standard
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Expand Up @@ -148,5 +148,3 @@ onset duration trial_type Response Stimulus response_time
315.740 0.200 auditory standard stimulus presentation 0.000 standard n/a
318.586 0.200 auditory standard stimulus presentation 0.000 standard n/a
320.837 n/a n/a 0.000 standard n/a
n/a n/a n/a 5.479 0 standard
n/a n/a n/a 8.093 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
322.341 0.200 auditory oddball stimulus presentation 1.000 target n/a
322.341 0.330 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
325.188 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.817 0 standard
n/a n/a n/a 7.827 0 standard
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Expand Up @@ -147,6 +147,3 @@ onset duration trial_type Response Stimulus response_time
303.253 0.200 visual standard stimulus presentation 0.000 standard n/a
305.652 0.200 visual standard stimulus presentation 0.000 standard n/a
308.647 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.755 0 standard
n/a n/a n/a 7.171 0 standard
n/a n/a n/a 9.189 1 target
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Expand Up @@ -145,5 +145,3 @@ onset duration trial_type Response Stimulus response_time
309.402 0.200 visual standard stimulus presentation 0.000 standard n/a
311.403 0.200 visual standard stimulus presentation 0.000 standard n/a
313.604 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 6.932 0 standard
n/a n/a n/a 9.945 0 standard
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Expand Up @@ -143,5 +143,3 @@ onset duration trial_type Response Stimulus response_time
319.692 0.200 visual oddball stimulus presentation 1.000 target n/a
319.692 0.372 behavioral response time following visual oddball stimulus onset 1.000 target n/a
321.694 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.294 0 standard
n/a n/a n/a 7.908 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
321.950 0.200 auditory oddball stimulus presentation 1.000 target n/a
321.950 0.612 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
324.597 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.771 0 standard
n/a n/a n/a 7.784 0 standard
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Expand Up @@ -148,5 +148,3 @@ onset duration trial_type Response Stimulus response_time
314.126 0.200 auditory standard stimulus presentation 0.000 standard n/a
317.171 0.200 auditory standard stimulus presentation 0.000 standard n/a
320.216 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.255 0 standard
n/a n/a n/a 7.869 0 standard
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Expand Up @@ -145,5 +145,3 @@ onset duration trial_type Response Stimulus response_time
313.899 0.200 auditory standard stimulus presentation 0.000 standard n/a
316.530 0.200 auditory standard stimulus presentation 0.000 standard n/a
318.581 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.192 0 standard
n/a n/a n/a 8.204 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
308.889 0.200 visual standard stimulus presentation 0.000 standard n/a
311.089 0.200 visual standard stimulus presentation 0.000 standard n/a
313.885 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.427 0 standard
n/a n/a n/a 8.041 0 standard
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Expand Up @@ -146,5 +146,3 @@ onset duration trial_type Response Stimulus response_time
316.024 n/a n/a 0.000 target n/a
319.019 0.200 visual standard stimulus presentation 0.000 standard n/a
321.219 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.216 0 standard
n/a n/a n/a 7.831 0 standard
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Expand Up @@ -147,6 +147,3 @@ onset duration trial_type Response Stimulus response_time
315.142 0.200 visual standard stimulus presentation 0.000 standard n/a
317.342 0.200 visual standard stimulus presentation 0.000 standard n/a
319.344 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.930 0 standard
n/a n/a n/a 7.345 0 standard
n/a n/a n/a 9.563 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
323.065 0.346 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
323.065 0.200 auditory oddball stimulus presentation 1.000 target n/a
326.092 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.563 0 standard
n/a n/a n/a 6.581 0 standard
n/a n/a n/a 8.996 0 standard
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Expand Up @@ -148,6 +148,3 @@ onset duration trial_type Response Stimulus response_time
318.103 0.200 auditory standard stimulus presentation 0.000 standard n/a
320.734 0.200 auditory standard stimulus presentation 0.000 standard n/a
323.183 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.417 0 standard
n/a n/a n/a 7.229 0 standard
n/a n/a n/a 9.663 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
318.947 0.200 auditory oddball stimulus presentation 1.000 target n/a
318.947 0.526 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
321.181 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.153 0 standard
n/a n/a n/a 6.766 0 standard
n/a n/a n/a 9.398 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
314.802 0.200 visual oddball stimulus presentation 1.000 target n/a
317.003 0.200 visual standard stimulus presentation 0.000 standard n/a
319.203 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.392 0 standard
n/a n/a n/a 6.807 0 standard
n/a n/a n/a 9.819 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
314.949 0.200 visual oddball stimulus presentation 1.000 target n/a
314.949 0.394 behavioral response time following visual oddball stimulus onset 1.000 target n/a
317.150 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.721 0 standard
n/a n/a n/a 7.732 0 standard
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Expand Up @@ -147,6 +147,3 @@ onset duration trial_type Response Stimulus response_time
306.352 0.200 visual standard stimulus presentation 0.000 standard n/a
308.750 0.200 visual standard stimulus presentation 0.000 standard n/a
310.951 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.279 0 standard
n/a n/a n/a 6.498 0 standard
n/a n/a n/a 8.516 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
312.001 0.200 auditory oddball stimulus presentation 1.000 target n/a
314.449 0.200 auditory standard stimulus presentation 0.000 standard n/a
316.684 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.734 0 standard
n/a n/a n/a 6.952 0 standard
n/a n/a n/a 9.185 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
305.185 0.200 auditory standard stimulus presentation 0.000 standard n/a
308.031 0.200 auditory standard stimulus presentation 0.000 standard n/a
310.860 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.785 0 standard
n/a n/a n/a 7.200 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
314.885 0.370 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
317.317 0.200 auditory standard stimulus presentation 0.000 standard n/a
320.362 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.657 0 standard
n/a n/a n/a 7.272 0 standard
n/a n/a n/a 9.306 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
308.230 0.200 visual standard stimulus presentation 0.000 standard n/a
311.226 0.200 visual oddball stimulus presentation 1.000 target n/a
311.226 0.383 behavioral response time following visual oddball stimulus onset 1.000 target n/a
n/a n/a n/a 4.753 0 standard
n/a n/a n/a 7.566 0 standard
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Expand Up @@ -148,6 +148,3 @@ onset duration trial_type Response Stimulus response_time
309.688 0.200 visual standard stimulus presentation 0.000 standard n/a
311.888 0.200 visual standard stimulus presentation 0.000 standard n/a
314.089 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.241 0 standard
n/a n/a n/a 6.855 0 standard
n/a n/a n/a 8.873 0 standard
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Expand Up @@ -145,6 +145,3 @@ onset duration trial_type Response Stimulus response_time
312.578 0.200 visual standard stimulus presentation 0.000 standard n/a
314.778 0.416 behavioral response time following visual oddball stimulus onset 1.000 target n/a
314.778 0.200 visual oddball stimulus presentation 1.000 target n/a
n/a n/a n/a 5.130 0 standard
n/a n/a n/a 7.942 0 standard
n/a n/a n/a 9.960 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
320.789 0.360 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
323.817 0.200 auditory standard stimulus presentation 0.000 standard n/a
326.648 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.216 0 standard
n/a n/a n/a 8.030 0 standard
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Expand Up @@ -148,6 +148,3 @@ onset duration trial_type Response Stimulus response_time
310.573 0.340 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
313.006 0.200 auditory standard stimulus presentation 0.000 standard n/a
315.437 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.126 0 standard
n/a n/a n/a 7.543 0 standard
n/a n/a n/a 9.578 1 target
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Expand Up @@ -148,5 +148,3 @@ onset duration trial_type Response Stimulus response_time
316.073 0.200 auditory oddball stimulus presentation 1.000 target n/a
316.073 0.396 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
318.506 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 6.160 0 standard
n/a n/a n/a 8.575 0 standard
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Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
312.177 0.340 behavioral response time following visual oddball stimulus onset 1.000 target n/a
314.577 0.200 visual oddball stimulus presentation 1.000 target n/a
314.577 0.356 behavioral response time following visual oddball stimulus onset 1.000 target n/a
n/a n/a n/a 4.927 0 standard
n/a n/a n/a 7.144 0 standard
n/a n/a n/a 9.163 0 standard
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Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
316.701 0.200 visual standard stimulus presentation 0.000 standard n/a
318.704 0.416 behavioral response time following visual oddball stimulus onset 1.000 target n/a
318.704 0.200 visual oddball stimulus presentation 1.000 target n/a
n/a n/a n/a 5.481 0 standard
n/a n/a n/a 8.491 0 standard
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Expand Up @@ -149,4 +149,3 @@ onset duration trial_type Response Stimulus response_time
313.839 0.200 visual oddball stimulus presentation 1.000 target n/a
315.841 0.200 visual standard stimulus presentation 0.000 standard n/a
318.240 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 9.187 0 standard
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Expand Up @@ -148,6 +148,3 @@ onset duration trial_type Response Stimulus response_time
316.596 0.405 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
319.027 0.200 auditory oddball stimulus presentation 1.000 target n/a
319.027 0.378 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
n/a n/a n/a 4.562 0 standard
n/a n/a n/a 7.376 0 standard
n/a n/a n/a 9.394 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -148,6 +148,3 @@ onset duration trial_type Response Stimulus response_time
317.633 0.373 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
317.633 0.200 auditory oddball stimulus presentation 1.000 target n/a
319.866 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.343 0 standard
n/a n/a n/a 6.362 0 standard
n/a n/a n/a 8.794 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -148,6 +148,3 @@ onset duration trial_type Response Stimulus response_time
315.021 0.200 auditory standard stimulus presentation 0.000 standard n/a
317.669 0.200 auditory standard stimulus presentation 0.000 standard n/a
320.696 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.106 0 standard
n/a n/a n/a 7.324 0 standard
n/a n/a n/a 9.938 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
307.663 0.200 visual oddball stimulus presentation 1.000 target n/a
310.261 0.200 visual standard stimulus presentation 0.000 standard n/a
312.463 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.401 0 standard
n/a n/a n/a 7.213 0 standard
n/a n/a n/a 9.828 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
313.601 0.200 visual oddball stimulus presentation 1.000 target n/a
313.601 0.418 behavioral response time following visual oddball stimulus onset 1.000 target n/a
316.198 0.200 visual standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.365 0 standard
n/a n/a n/a 7.177 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -147,5 +147,3 @@ onset duration trial_type Response Stimulus response_time
317.927 0.200 visual standard stimulus presentation 0.000 standard n/a
320.128 0.200 visual oddball stimulus presentation 1.000 target n/a
320.128 0.438 behavioral response time following visual oddball stimulus onset 1.000 target n/a
n/a n/a n/a 5.117 0 standard
n/a n/a n/a 7.733 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
312.915 0.200 auditory standard stimulus presentation 0.000 standard n/a
315.347 0.200 auditory standard stimulus presentation 0.000 standard n/a
318.376 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 4.540 0 standard
n/a n/a n/a 6.557 0 standard
n/a n/a n/a 8.973 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
315.466 0.200 auditory standard stimulus presentation 0.000 standard n/a
317.518 0.200 auditory standard stimulus presentation 0.000 standard n/a
319.968 0.200 auditory standard stimulus presentation 0.000 standard n/a
n/a n/a n/a 5.238 0 standard
n/a n/a n/a 7.256 0 standard
n/a n/a n/a 9.688 1 target
Original file line number Diff line number Diff line change
Expand Up @@ -149,6 +149,3 @@ onset duration trial_type Response Stimulus response_time
312.332 0.200 auditory standard stimulus presentation 0.000 standard n/a
314.366 0.200 auditory oddball stimulus presentation 1.000 target n/a
314.366 0.443 behavioral response time following auditory oddball stimulus onset 1.000 target n/a
n/a n/a n/a 4.683 1 standard
n/a n/a n/a 7.496 0 standard
n/a n/a n/a 9.515 0 standard
Original file line number Diff line number Diff line change
Expand Up @@ -149,5 +149,3 @@ onset duration trial_type Response Stimulus response_time
306.024 0.200 visual standard stimulus presentation 0.000 standard n/a
308.026 0.200 visual oddball stimulus presentation 1.000 target n/a
308.026 0.335 behavioral response time following visual oddball stimulus onset 1.000 target n/a
n/a n/a n/a 4.731 0 standard
n/a n/a n/a 7.147 0 standard
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