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[ENH] BEP001 - qMRI maps and some additional metadata (#690)
* Edit non-param table, add legacy list * Add table for parametric maps * Add description for parametric maps. * Add templates for file collections * Typo, wording for NumberShots * Add spoiling metadata * Update entity schema src * split * Update src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md Co-authored-by: Taylor Salo <[email protected]> * Wording * a.u. --> arbitrary * legacy --> deprecated * mod --> label * ADD explanations about fundamental contrasts * Drop part from qMaps * update entity table * STY: Use .md links, fix table formatting * Update src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md Co-authored-by: Chris Markiewicz <[email protected]> * [ADD] qMRI Appendix * ADD SA2RAGE and qMRI appendix links * Entity and entity tables - Avoid conflict with #692 - Add applicable TB1map file collections * ADD MixingTime & Improve NumberShots * Consistency * Address comment * map units * Super minot textual edits * Some small textual fixes in 10-file-collections * re-render entity table after rebase using python tools/bids_schema.py entities src/schema/ src/99-appendices/04-entity-table.md * fix call to use entitytable, not entities * fix 09-entities using correct schema call * Drop latin phrases * Fix double quotes * Codeblock type fix * Fix article hyperlinks --> DOI * Punctuation fixes * Add section links iof italics * Drop etc. * Rm Latin phrase * add missing newline at end of file * major syntax+linebreak overhaul qmri appendix * remaining qmri appendix syntax issues, except one to be discussed * fix table pipes in 10-file-collections.md * fix ill-formatted links * some more link fixes * one more link * Fix typo * Fix parantheses * Make spoiling-relevant requirements more explicit * Wording suggestion * Add unit for MixingTime * Fix typo * Define R1,R2,R2star and re-arrange rows * Fix double quotes * Fix typo * Wording suggestion * Rm verbosity * Wording fix * Number of shots array/number explanation * Update src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/99-appendices/11-qmri.md Co-authored-by: Chris Markiewicz <[email protected]> * Update src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md Co-authored-by: Chris Markiewicz <[email protected]> * fix links by converting to lowercase * STY: Align table fences * STY: Fix link syntax, one more table fence * Fix typo * Fix paranthesis * STY: Align table fences * Move UNIT1 to non-parametric table * Fix typo * Fix typo * Drop the term grayscale * Align table fence * STY: Align table fences Co-authored-by: Taylor Salo <[email protected]> Co-authored-by: Chris Markiewicz <[email protected]> Co-authored-by: Chris Markiewicz <[email protected]> Co-authored-by: Gilles de Hollander <[email protected]> Co-authored-by: Stefan Appelhoff <[email protected]>
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