Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[ENH] Bep 009: Positron Emission Tomography #633

Merged
merged 184 commits into from
Apr 7, 2021
Merged
Show file tree
Hide file tree
Changes from 1 commit
Commits
Show all changes
184 commits
Select commit Hold shift + click to select a range
93c602f
BEP-009 Initial PR
effigies Oct 2, 2020
35359e9
start every sentence on a new line
Remi-Gau Oct 3, 2020
b18bd0c
enforce line length
Remi-Gau Oct 3, 2020
051a147
lint tables
Remi-Gau Oct 3, 2020
1150348
remove trailing white spaces
Remi-Gau Oct 3, 2020
bf30ea1
remove latin expression
Remi-Gau Oct 5, 2020
29c53fc
add markup to filenames elements and other BIDS 'entities'
Remi-Gau Oct 5, 2020
8c0d09e
further fix on the 'for example'
Remi-Gau Oct 5, 2020
020974a
add markup in tables and fix linter
Remi-Gau Oct 5, 2020
dc032ac
use internal links
Remi-Gau Oct 5, 2020
46fda9e
fix trailing white space and lint tables
Remi-Gau Oct 5, 2020
b63feab
Merge pull request #639 from Remi-Gau/remi-BEP_009
Remi-Gau Oct 5, 2020
7159993
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 21, 2020
829bfbd
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 21, 2020
c66239f
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 21, 2020
32b44f8
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 21, 2020
554e27e
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 21, 2020
58e272d
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 21, 2020
cc8f575
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
d27016c
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
708b458
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
281a8f9
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
b87ac1c
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
4e6b2f2
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
6df03c9
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
b9a1671
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 22, 2020
4e629a6
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
322a1e0
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
d92b4d6
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
4461603
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
f3af94d
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
c09194b
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
04880fa
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
e0d7259
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
f7f6a34
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
d6a819b
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
345f67f
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
88af9b1
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
0c07047
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
604bce8
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
a44e827
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Oct 27, 2020
0f4b56f
Merge pull request #684 from bids-standard/master
effigies Nov 30, 2020
47b18ba
Updated 01-introduction.md to include PET
mnoergaard Dec 1, 2020
0e55c5b
Updated 01-introduction.md to include PET
mnoergaard Dec 1, 2020
77c8661
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Dec 7, 2020
5d8c424
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Dec 7, 2020
f1be059
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Dec 7, 2020
5de7fdc
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Dec 7, 2020
1ea319d
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Dec 7, 2020
a381c38
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Dec 7, 2020
ce12f1c
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Dec 7, 2020
773cb3e
Update 09-positron-emission-tomography.md
melanieganz Dec 7, 2020
0d3e5d4
Update 09-positron-emission-tomography.md
melanieganz Dec 7, 2020
b6c5e66
Update 09-positron-emission-tomography.md
melanieganz Dec 7, 2020
e96f0bf
MNT: Add PET to table of contents for easy access
effigies Dec 7, 2020
16e38ce
Updates following meeting with BIDS maintainers on the 9/12-2020 (htt…
mnoergaard Jan 6, 2021
b36b67d
Merge branch 'bep-009' into bep-009
melanieganz Jan 6, 2021
0dd429e
Merge pull request #704 from mnoergaard/bep-009
melanieganz Jan 6, 2021
1868a8e
Merge remote-tracking branch 'upstream/master' into bep-009
effigies Jan 13, 2021
2dec798
Set cross-modality correspondence to appendix XIII
effigies Jan 13, 2021
392d336
ENH: Add link definitions
effigies Jan 13, 2021
1d39634
SCHEMA: Fix tabs
effigies Jan 13, 2021
4201161
STY: Fix table fences, trailing white space
effigies Jan 14, 2021
479650d
STY: Table fences
effigies Jan 14, 2021
3bef729
STY: Remove consecutive blank lines
effigies Jan 14, 2021
cb1ec07
STY: code-quote example values
effigies Jan 14, 2021
722fd4e
Merge remote-tracking branch 'upstream/master' into bep-009
effigies Jan 15, 2021
6b88647
Updated links for example PET data sets
mnoergaard Jan 18, 2021
a23ecae
Merge pull request #711 from mnoergaard/bep-009
melanieganz Jan 19, 2021
7a5db41
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 19, 2021
fa2e790
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 19, 2021
22b0342
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 19, 2021
ae2bec4
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 19, 2021
bb670d5
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 19, 2021
96a73c5
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 19, 2021
a5b3074
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 19, 2021
c9a618f
[FIX] add underscore in name for blood files.
mnoergaard Jan 19, 2021
97ddb00
Merge branch 'bep-009' of https://github.com/bids-standard/bids-speci…
mnoergaard Jan 19, 2021
5038853
Suggestions for BEP-009
effigies Jan 19, 2021
d361781
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
0618725
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
7275d8b
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
8338d6a
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
b7dff24
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
c72c8ed
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
6cfac5f
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
e6bef40
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
206e6fe
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
caccec6
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
2a2e78d
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
8c12886
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
0aeec41
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
9a7cca8
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
d05bc5c
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
1a6dca2
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
7f63363
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
fa52ae8
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
dd62b3f
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
2c0ddf4
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
83ae79c
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
307c9ab
Update src/schema/datatypes/pet.yaml
melanieganz Jan 26, 2021
8181c68
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
38bafa4
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
0cf0af7
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
15c7d7e
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
daefa47
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
77adaf7
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Jan 26, 2021
460a641
Style + formatting suggestions for BEP-009 (#710)
robertoostenveld Feb 2, 2021
2a9322e
fix latin, change quotation marks
sappelhoff Feb 2, 2021
eedf510
[FIX] Update src/04-modality-specific-files/09-positron-emission-tomo…
mnoergaard Feb 5, 2021
266306b
FIX: add png version of PET_scan_overview
mnoergaard Feb 11, 2021
0df731c
FIX: Update src/04-modality-specific-files/09-positron-emission-tomog…
mnoergaard Feb 11, 2021
fedab1f
Additional suggestions for BEP-009 (#730)
effigies Feb 13, 2021
ead3aca
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
f3f4eba
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
3af030d
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
d7c693e
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
508df58
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
ca1fb00
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
9ba27a3
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
15d6003
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
4eaaf9a
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
41778bb
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
1aea1e2
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
84f86fd
Update src/04-modality-specific-files/09-positron-emission-tomography.md
melanieganz Feb 18, 2021
5d3bb66
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
b2895d8
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
31ace05
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
12d0fa7
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
a6e1df9
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
46a544e
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
46ce71b
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
ba8ba47
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
f4ba348
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
a135482
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
6b92e4a
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
6c5ef90
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
e49c608
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
f506deb
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
80644a5
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
6c16176
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
3a9e801
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
698e969
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
6aaa470
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
46f7b2e
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
9113a3d
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
414e2da
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
c2a1ef0
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
57f4442
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
4c9fb14
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 18, 2021
2d3d902
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Feb 25, 2021
d5f6793
Merge remote-tracking branch 'upstream/master' into bep-009
effigies Mar 2, 2021
939f7ab
STY: Fix table pipes
effigies Mar 2, 2021
ff6445b
STY: e.g. -> for example
effigies Mar 2, 2021
31511d7
remove extra image
Remi-Gau Mar 2, 2021
f9fa78e
Use macros.
tsalo Mar 11, 2021
bad8e5b
Merge branch 'bep-009' into render-pet
tsalo Mar 11, 2021
1ab6062
Fix schema.
tsalo Mar 11, 2021
82ff59d
Add tracer entity.
tsalo Mar 11, 2021
f07a2ef
Add PET to entity table.
tsalo Mar 11, 2021
92a9bd7
Took a guess about the associated metadata field.
tsalo Mar 11, 2021
f8ec1b4
Merge pull request #753 from tsalo/render-pet
tsalo Mar 12, 2021
7e97b04
Merge branch 'master' into update-from-master
tsalo Mar 15, 2021
902a92f
Add spaces to list for remark.
tsalo Mar 15, 2021
a056294
Fix list for real.
tsalo Mar 15, 2021
f66ba7b
Merge branch 'master' into update-from-master
tsalo Mar 15, 2021
d7acc72
Merge pull request #756 from tsalo/update-from-master
tsalo Mar 15, 2021
e00615a
Update 09-positron-emission-tomography.md
mnoergaard Mar 18, 2021
7125aca
Merge branch 'master' into bep-009
sappelhoff Mar 30, 2021
8dd1aab
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Mar 30, 2021
9f456c2
extend example for "uninterrupted runs"
sappelhoff Mar 30, 2021
844d76b
Remove acq from PET filenames.
tsalo Apr 2, 2021
613d5fa
Merge pull request #769 from tsalo/bep009-fix-schema
tsalo Apr 2, 2021
d9e4f42
Add task events to PET-BIDS specification
mnoergaard Apr 6, 2021
10dd545
Update pet.yaml and PET-BIDS specification to include events in template
mnoergaard Apr 6, 2021
e6436cb
Remove metabolite_polar_fraction as required in the description
mnoergaard Apr 6, 2021
05265c5
Update src/schema/datatypes/pet.yaml
mnoergaard Apr 7, 2021
0c5eab6
Update src/schema/datatypes/pet.yaml
mnoergaard Apr 7, 2021
27fe8ad
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Apr 7, 2021
640676c
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Apr 7, 2021
f28a4b9
Minor correction to column name hplc_recovery_fractions
mnoergaard Apr 7, 2021
fd74302
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Apr 7, 2021
5d3965c
Update src/04-modality-specific-files/09-positron-emission-tomography.md
mnoergaard Apr 7, 2021
d1870bc
Update 09-positron-emission-tomography.md
mnoergaard Apr 7, 2021
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Loading