[ENH] BEP001 - qMRI maps and some additional metadata

mkdocs.yml

@@ -50,6 +50,7 @@ nav:
         - Coordinate systems: 99-appendices/08-coordinate-systems.md
         - Entities: 99-appendices/09-entities.md
         - File collections: 99-appendices/10-file-collections.md
+        - Quantitative MRI: 99-appendices/11-qmri.md
       - Changelog: CHANGES.md
     - The BIDS Starter Kit:
       - GitHub repository: https://github.com/bids-standard/bids-starter-kit

src/schema/datatypes/anat.yaml

@@ -3,17 +3,12 @@
 - suffixes:
     - T1w
     - T2w
-    - T1rho
-    - T1map
-    - T2map
-    - T2star
+    - PDw
+    - T2starw
     - FLAIR
-    - FLASH
-    - PD
-    - PDmap
-    - PDT2
     - inplaneT1
     - inplaneT2
+    - PDT2
     - angio
   extensions:
     - .nii.gz
@@ -28,6 +23,38 @@
     rec: optional
     part: optional
 # Second group
+- suffixes:
+    - T1map
+    - T2map
+    - T2starmap
+    - R1map
+    - R2map
+    - R2starmap
+    - PDmap
+    - MTRmap
+    - MTsat
+    - UNIT1
+    - T1rho
+    - MWFmap
+    - MTVmap
+    - PDT2map
+    - Chimap
+    - TB1map
+    - RB1map
+    - S0map
+    - M0map
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+# Third group
 - suffixes:
     - defacemask
   extensions:
@@ -42,3 +69,105 @@
     ce: optional
     rec: optional
     mod: optional
+# Fourth group
+- suffixes:
+    - MESE
+    - MEGRE
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    echo: required
+    part: optional
+# Fifth group
+- suffixes:
+    - VFA
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    flip: required
+    part: optional
+# Sixth group
+- suffixes:
+    - IRT1
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    inv: required
+    part: optional
+# Seventh group
+- suffixes:
+    - MP2RAGE
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    echo: optional
+    flip: required
+    inv: required
+    part: optional
+# Eighth group
+- suffixes:
+    - MPM
+    - MTS
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    echo: optional
+    flip: required
+    mt: required
+    part: optional
+# Nineth group
+- suffixes:
+    - MTR
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    mt: required
+    part: optional

src/schema/datatypes/fmap.yaml

@@ -31,3 +31,36 @@
     ce: optional
     dir: required
     run: optional
+# Third group
+- suffixes:
+    - TB1DAM
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    flip: required
+    part: optional
+# Fourth group
+- suffixes:
+    - TB1EPI
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
+  entities:
+    sub: required
+    ses: optional
+    run: optional
+    acq: optional
+    ce: optional
+    rec: optional
+    echo: required
+    flip: required
+    part: optional