Merge branch 'fix/deno_2_test_and_build' of github.com:bids-standard/…

…bids-validator-temp into fix/deno_2_test_and_build
bids-standard · Oct 31, 2024 · b896bbf · b896bbf
2 parents e36d8f5 + 6d85c62
commit b896bbf
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Showing 6 changed files with 2 additions and 272 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
diff --git a/.github/workflows/docker-build-push.yml b/.github/workflows/docker-build-push.yml
diff --git a/.github/workflows/node_tests.yml b/.github/workflows/node_tests.yml
diff --git a/.github/workflows/test-bids-examples.yml b/.github/workflows/test-bids-examples.yml
diff --git a/bids-validator/deno.json b/bids-validator/deno.json
@@ -35,7 +35,7 @@
     "@hed/validator": "npm:[email protected]",
     "@ignore": "npm:[email protected]",
     "@libs/xml": "jsr:@libs/[email protected]",
-    "@mango/nifti": "npm:[email protected].8",
+    "@mango/nifti": "npm:@bids/[email protected].9",
     "@std/assert": "jsr:@std/[email protected]",
     "@std/fmt": "jsr:@std/[email protected]",
     "@std/fs": "jsr:@std/[email protected]",

diff --git a/bids-validator/src/files/nifti.ts b/bids-validator/src/files/nifti.ts
@@ -27,22 +27,11 @@ async function extract(buffer: Uint8Array, nbytes: number): Promise<Uint8Array>
   return result
 }
 
-function readHeaderQuiet(buf: ArrayBuffer) {
-  const console_error = console.error
-  const console_log = console.log
-  console.error = (msg: string) => { logger.info(msg)}
-  console.log = (msg: string) => { logger.info(msg)}
-  const header = readHeader(buf)
-  console.error = console_error
-  console.log = console_log
-  return header
-}
-
 export async function loadHeader(file: BIDSFile): Promise<NiftiHeader> {
   try {
     const buf = await file.readBytes(1024)
     const data = isCompressed(buf.buffer) ? await extract(buf, 540) : buf
-    const header = readHeaderQuiet(data.buffer)
+    const header = readHeader(data.buffer)
     if (!header) {
       throw { key: 'NIFTI_HEADER_UNREADABLE' }
     }