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Rough code adding some support for manifest #18

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Commits on Jan 12, 2018

  1. Updating data definitions for Siemens BIDS2NDA conversion

    scanner_software_versions_pd
    get from SoftwareVersions
    edited at line 165:
    dict_append(image03_dict, 'scanner_software_versions_pd',
    metadata.get("HardcopyDeviceSoftwareVersion", ""))
    to
    dict_append(image03_dict, 'scanner_software_versions_pd',
    metadata.get("SoftwareVersions", ""))
    
    image_slice_thickness SliceThickness
    Inserted at line 170
    dict_append(image03_dict, 'image_slice_thickness',
    metadata.get("SliceThickness", ""))
    mtnhuck authored and mtnhuck committed Jan 12, 2018
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  2. Data dictionary for image_orientation

    Edited to include image_orientation
    
    image_orientation: modified from
    https://stackoverflow.com/questions/34782409/understanding-dicom-image-a
    ttributes-to-get-axial-coronal-sagittal-cuts and
    rordenlab/dcm2niix#153 (comment)
    
    photomet_interpret: from DICOM/JSON field PhotometricInterpretation
    mtnhuck authored and mtnhuck committed Jan 12, 2018
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  3. Slightly modified readme.md

    Added a notes section talking about required experiment_id field
    mtnhuck authored and mtnhuck committed Jan 12, 2018
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Commits on Jan 13, 2018

  1. Edits to try to fix image_orientation

    mtnhuck authored and mtnhuck committed Jan 13, 2018
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Commits on Jan 14, 2018

  1. Update references

    Updated for SliceThickness and PhotometricInterpretation
    mtnhuck authored and mtnhuck committed Jan 14, 2018
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Commits on Jan 15, 2018

  1. Finally got it to pull PhotometricInterpretation but doesn't work for…

    … fieldmaps
    mtnhuck authored and mtnhuck committed Jan 15, 2018
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Commits on Feb 1, 2018

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Commits on Jun 2, 2018

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  2. fix bug in slice-timing and TR extraction

        There was a redundant if/else confusing things. I removed it.
        Also a value always has to be assigned to each element of
        image03dict the conversion to a dataframe fails
    leej3 committed Jun 2, 2018
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  4. add arg for experiment id.

    I think its the id listed for collection on the NDA site.
    leej3 committed Jun 2, 2018
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  5. update available scan types

    leej3 committed Jun 2, 2018
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Commits on Jul 24, 2018

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Commits on Aug 14, 2018

  1. Merge commit 'bd3fb46fc8c1c3bb02abe07ecb0bb4c92df23d89'

    * commit 'bd3fb46fc8c1c3bb02abe07ecb0bb4c92df23d89':
      add FLASH to possible scantypes
    
    # Conflicts:
    #	bids2nda/main.py
    leej3 committed Aug 14, 2018
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Commits on Apr 4, 2019

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Commits on Apr 8, 2019

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