v0.0.4

What's Changed

• Update data processing by @enriquea in #90
• Added cli option for batch correction by @enriquea in #91
• minor update with figure description by @ypriverol in #92
• Dev by @ypriverol in #93
• Added support for anndata by @enriquea in #94
• minor refinements by @ypriverol in #95
• added logging output and description by @enriquea in #96
• Dev by @ypriverol in #97
• 0.0.3 -> 0.0.4 version updated by @ypriverol in #98
• Polish CLI by @mobiusklein in #99
• Clean code, remove print -> logger, add all authors. by @ypriverol in #100
• Dev by @ypriverol in #101

Full Changelog: v0.0.3...v0.0.4

v0.0.3

What's Changed

• version 0.0.2 increased. by @ypriverol in #20
• Polars by @ypriverol in #21
• version 0.0.2 increased. by @ypriverol in #22
• Polars by @ypriverol in #23
• add QC profile for each step by @WangHong007 in #24
• Added required test scripts to perform the following tasks: by @enriquea in #19
• Normalized peptide intensities generated from MSstats using streaming processing by @WangHong007 in #25
• Bugs fixed by @WangHong007 in #26
• filter proteins didn't found in fasta by @WangHong007 in #27
• make remove_low_frequency_peptides as a flag by @WangHong007 in #28
• ibaqpy update by @WangHong007 in #29
• Enable parquet streaming by @WangHong007 in #30
• pre-update of ibaqpy by @WangHong007 in #31
• Get protein accessions from multiple databases by @WangHong007 in #32
• adapt to new pandas by @WangHong007 in #33
• Temp PR for stream normalization by @WangHong007 in #36
• Fix bugs and add quantile normalization considers NA values by @WangHong007 in #37
• Major update of ibaqpy by @WangHong007 in #45
• add mergeFractions by @WangHong007 in #47
• update: doc by @zprobot in #48
• benchmark by @zprobot in #50
• update: ibaq by @zprobot in #51
• optimize by @zprobot in #52
• update: benchmark by @zprobot in #53
• First iteration benchmark by @ypriverol in #54
• Patch by @ypriverol in #56
• small changes in benchmark by @ypriverol in #55
• python black added by @ypriverol in #57
• update: todo by @zprobot in #58
• update by @zprobot in #60
• Refactoring of the commandline by @ypriverol in #59
• update: readme by @zprobot in #61
• update: benchmark by @zprobot in #62
• Minor changes in the README by @ypriverol in #63
• Dev by @ypriverol in #64
• update: benchmark by @zprobot in #65
• update: benchmark by @zprobot in #66
• update: benchmark by @zprobot in #67
• update: benchmark by @zprobot in #68
• update: benchmark by @zprobot in #69
• ENTRAPMENT -> ENTRAP by @ypriverol in #70
• update: ibaqpy by @zprobot in #73
• update: test by @zprobot in #75
• changes in dependencies by @ypriverol in #74
• tpa by @zprobot in #77
• major changes for package remove setup.py by @ypriverol in #78
• little change by @zprobot in #80
• update: variable by @zprobot in #81
• Major refactoring of the structure of the project. by @ypriverol in #79
• Add qodana CI checks by @qodana-cloud in #83
• documenting code and functions. by @ypriverol in #82
• update：doc by @zprobot in #86
• update: doc by @zprobot in #87
• Refactoring of static data and dispatch behavior, I/O streamlining by @mobiusklein in #88
• Dev by @ypriverol in #89

New Contributors

• @enriquea made their first contribution in #19
• @zprobot made their first contribution in #48
• @qodana-cloud made their first contribution in #83
• @mobiusklein made their first contribution in #88

Full Changelog: 0.0.2...v0.0.3

Release v0.0.2

What's Changed

• Filter msstats by @WangHong007 in #16
  • Filter peptides with length < 7
  • Filter proteins with less than 2 unique peptides.

Full Changelog: 0.0.1...0.0.2

Release v0.0.1

First pre-release:

What's Changed

• Small changes by @ypriverol in #1
• Peptide intensity tables script by @ypriverol in #2
• minor changes to include compress in the normalization tool by @ypriverol in #3
• Update by @ypriverol in #5
• q-values when Posterior Error probability by @ypriverol in #6
• fixed some bugs and adapted to TMT by @daichengxin in #7
• Update peptide_file_generation.py by @daichengxin in #8
• Compute TPA and protein concentration by @WangHong007 in #10
• Preliminary update by @WangHong007 in #11

New Contributors

• @ypriverol made their first contribution in #1
• @daichengxin made their first contribution in #7
• @WangHong007 made their first contribution in #10

Full Changelog: https://github.com/bigbio/ibaqpy/commits/0.0.1