chore: Replace mutect2_par wrapper with snakemake scattergather #327
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1 error and 4 warnings
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Test workflow (local FASTQs)
Process completed with exit code 1.
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Setup conda
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Setup conda
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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Test workflow (local FASTQs)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test workflow (local FASTQs)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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