add padding param to somatic_variant_calling_mutect2_split

bihealth · Feb 6, 2025 · 2dcc98f · 2dcc98f
1 parent 48747c4
commit 2dcc98f
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/snappy_pipeline/workflows/somatic_variant_calling/Snakefile b/snappy_pipeline/workflows/somatic_variant_calling/Snakefile
@@ -141,6 +141,7 @@ rule somatic_variant_calling_mutect2_split:
             )
         ),
     params:
+        padding=5000,
         ignore_chroms=wf.w_config.get("ignore_chroms", wf.config.get("ignore_chroms", [])),
         fai=config["static_data_config"]["reference"]["path"] + ".fai",
     log: