Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

feat: Add snakemake parameter --ignore-incomplete to snappy-pipeline #586

Merged
merged 2 commits into from
Dec 17, 2024
Merged

feat: Add snakemake parameter --ignore-incomplete to snappy-pipeline #586

merged 2 commits into from
Dec 17, 2024

Conversation

ErikaZ95
Copy link
Contributor

No description provided.

@ErikaZ95 ErikaZ95 linked an issue Dec 16, 2024 that may be closed by this pull request
Add snakemake parameter to snappy-pipeline #585
Closed
@ErikaZ95 ErikaZ95 changed the title Add snakemake parameter --ignore-incomplete to snappy-pipeline feat: Add snakemake parameter --ignore-incomplete to snappy-pipeline Dec 16, 2024
@tedil
Copy link
Member

tedil commented Dec 16, 2024

Btw, you can always add additional snakemake options behind --, e.g. snappy-snake -n foo bar baz -- --ignore-incomplete

@ErikaZ95
Copy link
Contributor Author

@tedil yes that is what i tried but it did not work, therefore i added it to the snappy-snake.py

@coveralls
Copy link

coveralls commented Dec 16, 2024 •
edited
Loading

Coverage Status

coverage: 85.765% (-0.005%) from 85.77%
when pulling 569fe21 on 585-add-snakemake-parameter-to-snappy-pipeline
into 4a6c2ec on main.

tedil
tedil approved these changes Dec 17, 2024
View reviewed changes
Copy link
Member

@tedil tedil left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM

@tedil tedil merged commit dbeb3ed into main Dec 17, 2024
5 checks passed
@tedil tedil deleted the 585-add-snakemake-parameter-to-snappy-pipeline branch December 17, 2024 14:14
@bihealth-bot bihealth-bot mentioned this pull request Dec 13, 2024
Open
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@tedil tedil tedil approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

Add snakemake parameter to snappy-pipeline
3 participants
@ErikaZ95 @tedil @coveralls