Optimized ClusterGraph( const FactorGraph&, bool) constructor

examples/Makefile

@@ -1,18 +1,18 @@
 # Include flags
 INC=-I../include
 # Library path flags
-LIBS=
+LIBS=-lgmpxx -lgmp
 # Location of libDAI library
 LIB=../lib
 # Compiler
 CC=g++
 # Compiler flags
-CCFLAGS=-Wno-deprecated -Wall -W -Wextra -fpic -O3 -static $(INC) $(LIBS)
+CCFLAGS=-Wno-deprecated -Wall -W -Wextra -fpic -O3 -static $(INC)
 
 all : uai2010-aie-solver
 
 uai2010-aie-solver : uai2010-aie-solver.cpp $(LIB)/libdai.a
-	$(CC) $(CCFLAGS) -o$@ $< $(LIB)/libdai.a
+	$(CC) $(CCFLAGS) -o$@ $< $(LIB)/libdai.a $(LIBS)
 
 # CLEAN
 ########

src/clustergraph.cpp

@@ -42,19 +42,28 @@ ClusterGraph::ClusterGraph( const std::vector<VarSet> & cls ) : _G(), _vars(), _
 }
 
 
-ClusterGraph::ClusterGraph( const FactorGraph& fg, bool onlyMaximal ) : _G( fg.bipGraph() ), _vars(), _clusters() {
+ClusterGraph::ClusterGraph( const FactorGraph& fg, bool onlyMaximal ) : _G( fg.nrVars(), 0 ), _vars(), _clusters() {
     // copy variables
     _vars.reserve( fg.nrVars() );
     for( size_t i = 0; i < fg.nrVars(); i++ )
         _vars.push_back( fg.var(i) );
 
-    // copy clusters
-    _clusters.reserve( fg.nrFactors() );
-    for( size_t I = 0; I < fg.nrFactors(); I++ )
-        _clusters.push_back( fg.factor(I).vars() );
-
-    if( onlyMaximal )
-        eraseNonMaximal();
+    if( onlyMaximal ) {
+        for( size_t I = 0; I < fg.nrFactors(); I++ )
+            if( fg.isMaximal( I ) ) {
+                _clusters.push_back( fg.factor(I).vars() );
+                size_t clind = _G.addNode2();
+                foreach( const Neighbor &i, fg.nbF(I) )
+                    _G.addEdge( i, clind, true );
+            }
+    } else {
+        // copy clusters
+        _clusters.reserve( fg.nrFactors() );
+        for( size_t I = 0; I < fg.nrFactors(); I++ )
+            _clusters.push_back( fg.factor(I).vars() );
+        // copy bipartite graph
+        _G = fg.bipGraph();
+    }
 }