BioBricks

BioBricks makes loading data from biological datasets easy.

pipx install biobricks

initialize

To get started configure biobricks with a path for bricks and a biobricks.ai token:

biobricks configure
> Choose path to store bricks: <input a local path>
> Input a token from biobricks.ai/token: <this is your access token>

Install and Use Bricks

To install a brick the command line command:

> biobricks install tox21

You can then use the brick in python as below:

import biobricks as bb
bb.assets('tox21') # get the paths for the 'tox21' brick

To list the bricks currently available visit status.biobricks.ai