Skip to content

Commit

Permalink
Add recipe r-deconcell (#45426)
Browse files Browse the repository at this point in the history
  • Loading branch information
pettyalex authored Jan 26, 2024
1 parent 91568ec commit 48b75ad
Show file tree
Hide file tree
Showing 2 changed files with 57 additions and 0 deletions.
4 changes: 4 additions & 0 deletions recipes/r-deconcell/build.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
#!/bin/bash

pushd Decon2/DeconCell
$R CMD INSTALL --build .
53 changes: 53 additions & 0 deletions recipes/r-deconcell/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,53 @@
{% set name = "r-deconcell" %}
{% set version = "0.1.0" %}
{% set vcommit = "335bf320df9c7dd15f636cff2c089d89ba6b786e" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://github.com/molgenis/systemsgenetics/archive/{{ vcommit }}.tar.gz
sha256: 9dadbe65cdbe72ca6f7bb6869770f40dc4fcea45945fbfb76ace61e41feb5b14


build:
number: 0
noarch: generic
rpaths:
- lib/R/lib/
- lib/
run_exports:
- {{ pin_subpackage('r-deconcell', max_pin="x") }}

requirements:
host:
- bioconductor-deconrnaseq
- bioconductor-edger
- r-base
- r-data.table
- r-devtools
- r-glmnet
run:
- bioconductor-deconrnaseq
- bioconductor-edger
- r-base
- r-data.table
- r-glmnet

test:
commands:
- $R -e "library(\"DeconCell\")"

about:
home: https://github.com/molgenis/systemsgenetics/tree/master/Decon2/DeconCell
license: GPL-3.0-or-later
license_family: GPL3
summary: DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models
description: |
DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models
dev_url: https://github.com/molgenis/systemsgenetics/tree/master/Decon2/DeconCell

extra:
recipe-maintainers:
- pettyalex

0 comments on commit 48b75ad

Please sign in to comment.