Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

redundans: add linux-aarch64 build #52233

Open
wants to merge 5 commits into
base: master
Choose a base branch
from
+10 −5
Open

redundans: add linux-aarch64 build #52233

Show file tree
Hide file tree
Changes from 3 commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
0f544cc
redundans: add linux-aarch64 build
martin-g Nov 20, 2024
2c610ff
Try with python 3.12
martin-g Nov 20, 2024
cc70586
Update meryl dependency to >= 1.3. 1.4.1 will provide support for aar…
martin-g Nov 20, 2024
573bdeb
Try with Python 3.12
martin-g Jan 3, 2025
3c1570c
Allow Python 3.12 in run deps
martin-g Jan 3, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 4 additions & 1 deletion recipes/redundans/build.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,7 @@
#!/bin/bash

set -xe

export CPATH=${PREFIX}/include
#Define the install folder and binary folder and create them
INSTALL_FOLDER=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
Expand All @@ -23,7 +26,7 @@ cp bin/platanus $INSTALL_FOLDER/bin && cp bin/GapCloser $INSTALL_FOLDER/bin && c
cp -r $INSTALL_FOLDER/bin/* $BIN_FOLDER/

#Compile last and copy its binaries to BIN_FOLDER
cd $BIN_FOLDER/last/ && make clean && make -j ${CPU_COUNT} && cd ..
cd $BIN_FOLDER/last/ && make clean && CXXFLAGS="${CXXFLAGS}" make -j ${CPU_COUNT} && cd ..
cp -t $BIN_FOLDER $BIN_FOLDER/last/bin/*

#Give permissions to test folder in order to run tests if required
Expand Down
8 changes: 5 additions & 3 deletions recipes/redundans/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ source:
sha256: {{ sha256hash }}

build:
number: 0
number: 1
skip: True # [osx]
run_exports:
- {{ pin_subpackage('redundans', max_pin="x") }}
Expand All @@ -25,7 +25,7 @@ requirements:
- {{ compiler('c') }}

host:
- python >=3.8,<3.11
- python >=3.8,<3.12
martin-g marked this conversation as resolved.
Show resolved Hide resolved
- pip
- zlib
- pillow
Expand All @@ -39,7 +39,7 @@ requirements:
- minimap2 >=2.24
- miniasm >=0.3
- gfastats >=1.3.6
- meryl =1.3
- meryl >=1.3
- bwa >=0.7.12
- snap-aligner >=2.0.3
- r-base >=4
Expand All @@ -60,6 +60,8 @@ about:
summary: 'Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.'

extra:
additional-platforms:
- linux-aarch64
identifiers:
- biotools:redundans
recipe-maintainers:
Expand Down
Loading