Skip to content

Navigation Menu

Appearance settings

biocore

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

biocore

Collaboratively developed bioinformatics software.

120 followers
Cyberspace
http://biocore.github.io/

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

gneiss gneiss Public

compositional data analysis toolbox

Jupyter Notebook 59 27

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C C++ CSS HTML JavaScript Jinja Jupyter Notebook Python

Sort

Select order

Last updated Name Stars

Showing 10 of 91 repositories

q2-conduit Public
Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts usable in downstream analyses

biocore/q2-conduit’s past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Aug 18, 2025
unifrac-binaries Public

biocore/unifrac-binaries’s past year of commit activity

C++ 2 BSD-3-Clause 9 3 0 Updated Aug 15, 2025
pysyndna Public
Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

biocore/pysyndna’s past year of commit activity

Python 0 0 1 0 Updated Aug 15, 2025
wol Public
Reference Phylogeny for Bacterial and Archaeal Genomes

biocore/wol’s past year of commit activity

Jupyter Notebook 25 BSD-3-Clause 18 0 0 Updated Aug 9, 2025
kl-metapool Public
Jupyter notebooks to assist with sample processing

biocore/kl-metapool’s past year of commit activity

Python 9 MIT 19 53 (2 issues need help) 2 Updated Aug 5, 2025
micov Public
Aggregate genome coverage

biocore/micov’s past year of commit activity

Python 4 5 8 0 Updated Jul 27, 2025
microsetta-processing Public
Processing scripts for The Microsetta Initiative

biocore/microsetta-processing’s past year of commit activity

Python 1 BSD-3-Clause 1 1 1 Updated Jul 11, 2025
biom-format Public
The Biological Observation Matrix (BIOM) Format Project

biocore/biom-format’s past year of commit activity

Python 95 94 23 4 Updated Jul 10, 2025
emperor Public
Emperor a tool for the analysis and visualization of large microbial ecology datasets

biocore/emperor’s past year of commit activity

JavaScript 55 47 61 3 Updated Jul 1, 2025
microsetta-interface Public
The Microsetta participant facing user interface

biocore/microsetta-interface’s past year of commit activity

Jinja 1 BSD-3-Clause 17 44 5 Updated Jun 30, 2025

View all repositories

People

Top languages

Python Jupyter Notebook JavaScript HTML C++

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.