New test (2) #3
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| name: PR Tests | ||
| # Trigger the workflow on pull request events | ||
| on: | ||
| pull_request: | ||
| types: [opened, synchronize, reopened] | ||
| jobs: | ||
| pr_test: | ||
| strategy: | ||
| matrix: | ||
| os: [self-hosted] | ||
| python-version: ["3.9", "3.10", "3.11", "3.12"] | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - name: Check out repository code | ||
| uses: actions/checkout@v4 | ||
| - run: echo "Repository -> ${{ github.repository }}" | ||
| - run: echo "Branch -> ${{ github.ref }}" | ||
| - run: echo "Trigger event -> ${{ github.event_name }}" | ||
| - run: echo "Runner OS -> ${{ runner.os }}" | ||
| - name: List files in the repository | ||
| run: | | ||
| ls ${{ github.workspace }} | ||
| - name: Remove all micromamba installations | ||
| run: | | ||
| rm -rf $HOME/.bash_profile $HOME/.conda $HOME/micromamba $HOME/micromamba-bin 2>/dev/null | ||
| touch $HOME/.bash_profile | ||
| - name: setup-micromamba | ||
| uses: mamba-org/[email protected] | ||
| with: | ||
| generate-run-shell: true | ||
| micromamba-version: '2.0.2-2' | ||
| post-cleanup: 'all' | ||
| init-shell: bash | ||
| environment-file: .github/env.yaml | ||
| create-args: >- | ||
| python=${{ matrix.python-version }} | ||
| pytest | ||
| pytest-cov | ||
| pytest-html | ||
| flake8 | ||
| pip | ||
| - name: List installed package versions | ||
| shell: bash -l {0} | ||
| run: micromamba list | ||
| - name: Checkout biobb_common | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| repository: bioexcel/biobb_common | ||
| path: './biobb_common' | ||
| - name: Run tests | ||
| shell: bash -l {0} | ||
| run: | | ||
| # Ignoring docker and singularity tests | ||
| export PYTHONPATH=.:./biobb_common:$PYTHONPATH | ||
| # Create directory for tests reports | ||
| mkdir -p ./reports/junit | ||
| # Production one | ||
| pytest biobb_analysis/test/unitests/ --ignore-glob=*container.py --ignore-glob=*docker.py --ignore-glob=*singularity.py | ||
| - name: Comment on PR | ||
| uses: actions/github-script@v6 | ||
| with: | ||
| script: | | ||
| const { context } = github; | ||
| const comment = ` | ||
| ✅ Tests Passed! | ||
| - Run ID: ${context.runId} | ||
| - Job ID: ${context.job}`; | ||
| await github.rest.issues.createComment({ | ||
| ...context.repo, | ||
| issue_number: context.issue.number, | ||
| body: comment | ||
| }); | ||
