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bioexcel · May 7, 2024 · a4c8e52 · a4c8e52
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diff --git a/coverage/class_index.html b/coverage/class_index.html
@@ -3,9 +3,9 @@
 <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
     <title>Coverage report</title>
-    <link rel="icon" sizes="32x32" href="favicon_32.png">
-    <link rel="stylesheet" href="style.css" type="text/css">
-    <script src="coverage_html.js" defer></script>
+    <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
+    <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
+    <script src="coverage_html_cb_da166b87.js" defer></script>
 </head>
 <body class="indexfile">
 <header>
@@ -16,7 +16,7 @@ <h1>Coverage report:
         <aside id="help_panel_wrapper">
             <input id="help_panel_state" type="checkbox">
             <label for="help_panel_state">
-                <img id="keyboard_icon" src="keybd_closed.png" alt="Show/hide keyboard shortcuts">
+                <img id="keyboard_icon" src="keybd_closed_cb_ce680311.png" alt="Show/hide keyboard shortcuts">
             </label>
             <div id="help_panel">
                 <p class="legend">Shortcuts on this page</p>
@@ -54,21 +54,21 @@ <h2>
                 <a class="button current">Classes</a>
         </h2>
         <p class="text">
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.0">coverage.py v7.5.0</a>,
-            created at 2024-04-30 15:03 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
+            created at 2024-05-07 08:44 +0000
         </p>
     </div>
 </header>
 <main id="index">
     <table class="index" data-sortable>
         <thead>
             <tr class="tablehead" title="Click to sort">
-                <th class="name left" aria-sort="none" data-shortcut="f">File<span class="arrows"></span></th>
-                <th class="name left" aria-sort="none" data-default-sort-order="ascending" data-shortcut="n">class<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="s">statements<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="m">missing<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="x">excluded<span class="arrows"></span></th>
-                <th class="right" aria-sort="none" data-shortcut="c">coverage<span class="arrows"></span></th>
+                <th id="file" class="name left" aria-sort="none" data-shortcut="f">File<span class="arrows"></span></th>
+                <th id="region" class="name left" aria-sort="none" data-default-sort-order="ascending" data-shortcut="n">class<span class="arrows"></span></th>
+                <th id="statements" aria-sort="none" data-default-sort-order="descending" data-shortcut="s">statements<span class="arrows"></span></th>
+                <th id="missing" aria-sort="none" data-default-sort-order="descending" data-shortcut="m">missing<span class="arrows"></span></th>
+                <th id="excluded" aria-sort="none" data-default-sort-order="descending" data-shortcut="x">excluded<span class="arrows"></span></th>
+                <th id="coverage" class="right" aria-sort="none" data-shortcut="c">coverage<span class="arrows"></span></th>
             </tr>
         </thead>
         <tbody>
@@ -179,8 +179,8 @@ <h2>
 <footer>
     <div class="content">
         <p>
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.0">coverage.py v7.5.0</a>,
-            created at 2024-04-30 15:03 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
+            created at 2024-05-07 08:44 +0000
         </p>
     </div>
     <aside class="hidden">

diff --git a/coverage/coverage.xml b/coverage/coverage.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" ?>
-<coverage version="7.5.0" timestamp="1714489421127" lines-valid="431" lines-covered="311" line-rate="0.7216" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
-	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.5.0 -->
+<coverage version="7.5.1" timestamp="1715071491250" lines-valid="431" lines-covered="311" line-rate="0.7216" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
+	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.5.1 -->
 	<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
 	<sources>
 		<source>/home/user/actions-runner/_work/biobb_cp2k/biobb_cp2k</source>

diff --git a/coverage/coverage_html.js → coverage/coverage_html_cb_da166b87.js b/coverage/coverage_html.js → coverage/coverage_html_cb_da166b87.js
@@ -81,7 +81,32 @@ function sortColumn(th) {
         .forEach(tr => tr.parentElement.appendChild(tr));
 
     // Save the sort order for next time.
-    localStorage.setItem(coverage.INDEX_SORT_STORAGE, JSON.stringify({column, direction}));
+    if (th.id !== "region") {
+        let th_id = "file";  // Sort by file if we don't have a column id
+        let current_direction = direction;
+        const stored_list = localStorage.getItem(coverage.INDEX_SORT_STORAGE);
+        if (stored_list) {
+            ({th_id, direction} = JSON.parse(stored_list))
+        }
+        localStorage.setItem(coverage.INDEX_SORT_STORAGE, JSON.stringify({
+            "th_id": th.id,
+            "direction": current_direction
+        }));
+        if (th.id !== th_id || document.getElementById("region")) {
+            // Sort column has changed, unset sorting by function or class.
+            localStorage.setItem(coverage.SORTED_BY_REGION, JSON.stringify({
+                "by_region": false,
+                "region_direction": current_direction
+            }));
+        }
+    }
+    else {
+        // Sort column has changed to by function or class, remember that.
+        localStorage.setItem(coverage.SORTED_BY_REGION, JSON.stringify({
+            "by_region": true,
+            "region_direction": direction
+        }));
+    }
 }
 
 // Find all the elements with data-shortcut attribute, and use them to assign a shortcut key.
@@ -223,18 +248,39 @@ coverage.wire_up_sorting = function () {
     );
 
     // Look for a localStorage item containing previous sort settings:
-    var column = 0, direction = "ascending";
+    let th_id = "file", direction = "ascending";
     const stored_list = localStorage.getItem(coverage.INDEX_SORT_STORAGE);
     if (stored_list) {
-        ({column, direction} = JSON.parse(stored_list));
+        ({th_id, direction} = JSON.parse(stored_list));
+    }
+    let by_region = false, region_direction = "ascending";
+    const sorted_by_region = localStorage.getItem(coverage.SORTED_BY_REGION);
+    if (sorted_by_region) {
+        ({
+            by_region,
+            region_direction
+        } = JSON.parse(sorted_by_region));
     }
 
-    const th = document.querySelector("[data-sortable]").tHead.rows[0].cells[column];  // nosemgrep: eslint.detect-object-injection
+    const region_id = "region";
+    if (by_region && document.getElementById(region_id)) {
+        direction = region_direction;
+    }
+    // If we are in a page that has a column with id of "region", sort on
+    // it if the last sort was by function or class.
+    let th;
+    if (document.getElementById(region_id)) {
+        th = document.getElementById(by_region ? region_id : th_id);
+    }
+    else {
+        th = document.getElementById(th_id);
+    }
     th.setAttribute("aria-sort", direction === "ascending" ? "descending" : "ascending");
     th.click()
 };
 
 coverage.INDEX_SORT_STORAGE = "COVERAGE_INDEX_SORT_2";
+coverage.SORTED_BY_REGION = "COVERAGE_SORT_REGION";
 
 // Loaded on index.html
 coverage.index_ready = function () {

diff --git a/coverage/favicon_32.png → coverage/favicon_32_cb_58284776.png b/coverage/favicon_32.png → coverage/favicon_32_cb_58284776.png
diff --git a/coverage/function_index.html b/coverage/function_index.html
@@ -3,9 +3,9 @@
 <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
     <title>Coverage report</title>
-    <link rel="icon" sizes="32x32" href="favicon_32.png">
-    <link rel="stylesheet" href="style.css" type="text/css">
-    <script src="coverage_html.js" defer></script>
+    <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
+    <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
+    <script src="coverage_html_cb_da166b87.js" defer></script>
 </head>
 <body class="indexfile">
 <header>
@@ -16,7 +16,7 @@ <h1>Coverage report:
         <aside id="help_panel_wrapper">
             <input id="help_panel_state" type="checkbox">
             <label for="help_panel_state">
-                <img id="keyboard_icon" src="keybd_closed.png" alt="Show/hide keyboard shortcuts">
+                <img id="keyboard_icon" src="keybd_closed_cb_ce680311.png" alt="Show/hide keyboard shortcuts">
             </label>
             <div id="help_panel">
                 <p class="legend">Shortcuts on this page</p>
@@ -54,21 +54,21 @@ <h2>
                 <a class="button" href="class_index.html">Classes</a>
         </h2>
         <p class="text">
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.0">coverage.py v7.5.0</a>,
-            created at 2024-04-30 15:03 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
+            created at 2024-05-07 08:44 +0000
         </p>
     </div>
 </header>
 <main id="index">
     <table class="index" data-sortable>
         <thead>
             <tr class="tablehead" title="Click to sort">
-                <th class="name left" aria-sort="none" data-shortcut="f">File<span class="arrows"></span></th>
-                <th class="name left" aria-sort="none" data-default-sort-order="ascending" data-shortcut="n">function<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="s">statements<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="m">missing<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="x">excluded<span class="arrows"></span></th>
-                <th class="right" aria-sort="none" data-shortcut="c">coverage<span class="arrows"></span></th>
+                <th id="file" class="name left" aria-sort="none" data-shortcut="f">File<span class="arrows"></span></th>
+                <th id="region" class="name left" aria-sort="none" data-default-sort-order="ascending" data-shortcut="n">function<span class="arrows"></span></th>
+                <th id="statements" aria-sort="none" data-default-sort-order="descending" data-shortcut="s">statements<span class="arrows"></span></th>
+                <th id="missing" aria-sort="none" data-default-sort-order="descending" data-shortcut="m">missing<span class="arrows"></span></th>
+                <th id="excluded" aria-sort="none" data-default-sort-order="descending" data-shortcut="x">excluded<span class="arrows"></span></th>
+                <th id="coverage" class="right" aria-sort="none" data-shortcut="c">coverage<span class="arrows"></span></th>
             </tr>
         </thead>
         <tbody>
@@ -347,8 +347,8 @@ <h2>
 <footer>
     <div class="content">
         <p>
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.0">coverage.py v7.5.0</a>,
-            created at 2024-04-30 15:03 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
+            created at 2024-05-07 08:44 +0000
         </p>
     </div>
     <aside class="hidden">

diff --git a/coverage/index.html b/coverage/index.html
@@ -3,9 +3,9 @@
 <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
     <title>Coverage report</title>
-    <link rel="icon" sizes="32x32" href="favicon_32.png">
-    <link rel="stylesheet" href="style.css" type="text/css">
-    <script src="coverage_html.js" defer></script>
+    <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
+    <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
+    <script src="coverage_html_cb_da166b87.js" defer></script>
 </head>
 <body class="indexfile">
 <header>
@@ -16,7 +16,7 @@ <h1>Coverage report:
         <aside id="help_panel_wrapper">
             <input id="help_panel_state" type="checkbox">
             <label for="help_panel_state">
-                <img id="keyboard_icon" src="keybd_closed.png" alt="Show/hide keyboard shortcuts">
+                <img id="keyboard_icon" src="keybd_closed_cb_ce680311.png" alt="Show/hide keyboard shortcuts">
             </label>
             <div id="help_panel">
                 <p class="legend">Shortcuts on this page</p>
@@ -53,20 +53,20 @@ <h2>
                 <a class="button" href="class_index.html">Classes</a>
         </h2>
         <p class="text">
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.0">coverage.py v7.5.0</a>,
-            created at 2024-04-30 15:03 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
+            created at 2024-05-07 08:44 +0000
         </p>
     </div>
 </header>
 <main id="index">
     <table class="index" data-sortable>
         <thead>
             <tr class="tablehead" title="Click to sort">
-                <th class="name left" aria-sort="none" data-shortcut="f">File<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="s">statements<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="m">missing<span class="arrows"></span></th>
-                <th aria-sort="none" data-default-sort-order="descending" data-shortcut="x">excluded<span class="arrows"></span></th>
-                <th class="right" aria-sort="none" data-shortcut="c">coverage<span class="arrows"></span></th>
+                <th id="file" class="name left" aria-sort="none" data-shortcut="f">File<span class="arrows"></span></th>
+                <th id="statements" aria-sort="none" data-default-sort-order="descending" data-shortcut="s">statements<span class="arrows"></span></th>
+                <th id="missing" aria-sort="none" data-default-sort-order="descending" data-shortcut="m">missing<span class="arrows"></span></th>
+                <th id="excluded" aria-sort="none" data-default-sort-order="descending" data-shortcut="x">excluded<span class="arrows"></span></th>
+                <th id="coverage" class="right" aria-sort="none" data-shortcut="c">coverage<span class="arrows"></span></th>
             </tr>
         </thead>
         <tbody>
@@ -137,8 +137,8 @@ <h2>
 <footer>
     <div class="content">
         <p>
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.0">coverage.py v7.5.0</a>,
-            created at 2024-04-30 15:03 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
+            created at 2024-05-07 08:44 +0000
         </p>
     </div>
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diff --git a/coverage/keybd_closed.png → coverage/keybd_closed_cb_ce680311.png b/coverage/keybd_closed.png → coverage/keybd_closed_cb_ce680311.png
diff --git a/coverage/keybd_open.png b/coverage/keybd_open.png
diff --git a/coverage/status.json b/coverage/status.json
@@ -1 +1 @@
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diff --git a/coverage/style.css → coverage/style_cb_8e611ae1.css b/coverage/style.css → coverage/style_cb_8e611ae1.css
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