Skip to content

Commit

Permalink
2024.1
Browse files Browse the repository at this point in the history
  • Loading branch information
gbayarri committed Jun 27, 2024
1 parent b641cf1 commit 52cc9b0
Show file tree
Hide file tree
Showing 8 changed files with 26 additions and 24 deletions.
14 changes: 7 additions & 7 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
[![](https://img.shields.io/conda/vn/bioconda/biobb_dna?label=Conda)](https://anaconda.org/bioconda/biobb_dna)
[![](https://img.shields.io/conda/dn/bioconda/biobb_dna?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_dna)
[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_dna?tab=tags)
[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0)
[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0)

[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_dna)
[![](https://img.shields.io/pypi/pyversions/biobb-dna.svg?label=Python%20Versions)](https://pypi.org/project/biobb-dna/)
Expand Down Expand Up @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site:
[latest API documentation](http://biobb-dna.readthedocs.io/en/latest/).

### Version
v4.2.3 2024.1
v4.2.4 2024.1

### Installation
Using PIP:
Expand All @@ -51,7 +51,7 @@ Using PIP:
* Installation:


pip install "biobb_dna>=4.2.3"
pip install "biobb_dna>=4.2.4"


* Usage: [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html)
Expand All @@ -61,7 +61,7 @@ Using ANACONDA:
* Installation:


conda install -c bioconda "biobb_dna>=4.2.3"
conda install -c bioconda "biobb_dna>=4.2.4"


* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-dna.readthedocs.io/en/latest/command_line.html)
Expand All @@ -71,13 +71,13 @@ Using DOCKER:
* Installation:


docker pull quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0
docker pull quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0


* Usage:


docker run quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0 <command>
docker run quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0 <command>

Using SINGULARITY:

Expand All @@ -86,7 +86,7 @@ Using SINGULARITY:
* Installation:


singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0
singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0


* Usage:
Expand Down
2 changes: 1 addition & 1 deletion biobb_dna/__init__.py
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name = "biobb_dna"
__all__ = ["dna", "curvesplus", "backbone", "stiffness",
"interbp_correlations", "intrabp_correlations"]
__version__ = "4.2.3"
__version__ = "4.2.4"
4 changes: 2 additions & 2 deletions biobb_dna/docs/source/change_log.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
# Biobb Analysis changelog

## What's new in version [4.2.3](https://github.com/bioexcel/biobb_dna/releases/tag/v4.2.3)?
In version 4.2.3 some bugs in Canion and Curves have been fixed. Added two new tools: CanalUnzip and DnaTimeseriesUnzip.
## What's new in version [4.2.4](https://github.com/bioexcel/biobb_dna/releases/tag/v4.2.4)?
In version 4.2.4 some bugs in Canion and Curves have been fixed. Added two new tools: CanalUnzip and DnaTimeseriesUnzip.

### New features

Expand Down
4 changes: 2 additions & 2 deletions biobb_dna/docs/source/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -74,9 +74,9 @@
# built documents.
#
# The short X.Y version.
version = u'4.2.3'
version = u'4.2.4'
# The full version, including alpha/beta/rc tags.
release = u'4.2.3'
release = u'4.2.4'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
Expand Down
14 changes: 7 additions & 7 deletions biobb_dna/docs/source/readme.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
[![](https://img.shields.io/conda/vn/bioconda/biobb_dna?label=Conda)](https://anaconda.org/bioconda/biobb_dna)
[![](https://img.shields.io/conda/dn/bioconda/biobb_dna?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_dna)
[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_dna?tab=tags)
[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0)
[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0)

[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_dna)
[![](https://img.shields.io/pypi/pyversions/biobb-dna.svg?label=Python%20Versions)](https://pypi.org/project/biobb-dna/)
Expand Down Expand Up @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site:
[latest API documentation](http://biobb-dna.readthedocs.io/en/latest/).

### Version
v4.2.3 2024.1
v4.2.4 2024.1

### Installation
Using PIP:
Expand All @@ -51,7 +51,7 @@ Using PIP:
* Installation:


pip install "biobb_dna>=4.2.3"
pip install "biobb_dna>=4.2.4"


* Usage: [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html)
Expand All @@ -61,7 +61,7 @@ Using ANACONDA:
* Installation:


conda install -c bioconda "biobb_dna>=4.2.3"
conda install -c bioconda "biobb_dna>=4.2.4"


* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-dna.readthedocs.io/en/latest/command_line.html)
Expand All @@ -71,13 +71,13 @@ Using DOCKER:
* Installation:


docker pull quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0
docker pull quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0


* Usage:


docker run quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0 <command>
docker run quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0 <command>

Using SINGULARITY:

Expand All @@ -86,7 +86,7 @@ Using SINGULARITY:
* Installation:


singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0
singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0


* Usage:
Expand Down
2 changes: 1 addition & 1 deletion biobb_dna/docs/source/schema.html
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@
"applicationSubCategory": "http://www.edamontology.org/topic_3892",
"citation": "https://www.nature.com/articles/s41597-019-0177-4",
"license": "https://www.apache.org/licenses/LICENSE-2.0",
"softwareVersion": "4.2.3",
"softwareVersion": "4.2.4",
"applicationSuite": "BioBB BioExcel Building Blocks",
"codeRepository": "https://github.com/bioexcel/biobb_dna",
"isAccessibleForFree": "True",
Expand Down
6 changes: 3 additions & 3 deletions biobb_dna/json_schemas/biobb_dna.json
Original file line number Diff line number Diff line change
Expand Up @@ -4,9 +4,9 @@
"github": "https://github.com/bioexcel/biobb_dna",
"readthedocs": "https://biobb-dna.readthedocs.io/en/latest/",
"conda": "https://anaconda.org/bioconda/biobb_dna",
"docker": "https://quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0",
"singularity": "https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0",
"version": "4.2.3",
"docker": "https://quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0",
"singularity": "https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0",
"version": "4.2.4",
"rest": true,
"tools": [
{
Expand Down
4 changes: 3 additions & 1 deletion setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@

setuptools.setup(
name="biobb_dna",
version="4.2.3",
version="4.2.4",
author="Biobb developers",
author_email="[email protected]",
description="Biobb_dna is a package composed of different analyses for nucleic acid trajectories.",
Expand All @@ -27,9 +27,11 @@
"console_scripts": [
"biobb_curves = biobb_dna.curvesplus.biobb_curves:main",
"biobb_canal = biobb_dna.curvesplus.biobb_canal:main",
"canal_unzip = biobb_dna.curvesplus.canal_unzip:main",
"biobb_canion = biobb_dna.curvesplus.biobb_canion:main",
"dna_averages = biobb_dna.dna.dna_averages:main",
"dna_timeseries = biobb_dna.dna.dna_timeseries:main",
"dna_timeseries_unzip = biobb_dna.dna.dna_timeseries_unzip:main",
"dna_bimodality = biobb_dna.dna.dna_bimodality:main",
"bipopulations = biobb_dna.backbone.bipopulations:main",
"canonicalag = biobb_dna.backbone.canonicalag:main",
Expand Down

0 comments on commit 52cc9b0

Please sign in to comment.