2024.2

README.md

@@ -3,7 +3,7 @@
 [![](https://img.shields.io/conda/vn/bioconda/biobb_godmd?label=Conda)](https://anaconda.org/bioconda/biobb_godmd)
 [![](https://img.shields.io/conda/dn/bioconda/biobb_godmd?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_godmd)
 [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_godmd?tab=tags)
-[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_godmd:4.2.0--pyhdfd78af_0)
+[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_godmd:5.0.0--pyhdfd78af_0)
 
 [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_godmd)
 [![](https://img.shields.io/pypi/pyversions/biobb-godmd.svg?label=Python%20Versions)](https://pypi.org/project/biobb-godmd/)
@@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site:
 [latest API documentation](http://biobb-godmd.readthedocs.io/en/latest/).
 
 ### Version
-v4.2.0 2024.1
+v5.0.0 2024.1
 
 ### Installation
 Using PIP:
@@ -51,7 +51,7 @@ Using PIP:
 * Installation:
 
 
-        pip install "biobb_godmd>=4.2.0"
+        pip install "biobb_godmd>=5.0.0"
 
 
 * Usage: [Python API documentation](https://biobb-godmd.readthedocs.io/en/latest/modules.html)
@@ -61,7 +61,7 @@ Using ANACONDA:
 * Installation:
 
 
-        conda install -c bioconda "biobb_godmd>=4.2.0"
+        conda install -c bioconda "biobb_godmd>=5.0.0"
 
 
 * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-godmd.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-godmd.readthedocs.io/en/latest/command_line.html)
@@ -71,13 +71,13 @@ Using DOCKER:
 * Installation:
 
 
-        docker pull quay.io/biocontainers/biobb_godmd:4.2.0--pyhdfd78af_0
+        docker pull quay.io/biocontainers/biobb_godmd:5.0.0--pyhdfd78af_0
 
 
 * Usage:
 
 
-        docker run quay.io/biocontainers/biobb_godmd:4.2.0--pyhdfd78af_0 <command>
+        docker run quay.io/biocontainers/biobb_godmd:5.0.0--pyhdfd78af_0 <command>
 
 
 Using SINGULARITY:
@@ -87,7 +87,7 @@ Using SINGULARITY:
 * Installation:
 
 
-        singularity pull --name biobb_godmd.sif https://depot.galaxyproject.org/singularity/biobb_godmd:4.2.0--pyhdfd78af_0
+        singularity pull --name biobb_godmd.sif https://depot.galaxyproject.org/singularity/biobb_godmd:5.0.0--pyhdfd78af_0
 
 
 * Usage:

biobb_godmd/__init__.py

@@ -1,4 +1,5 @@
 from . import godmd
+
 name = "biobb_godmd"
 __all__ = ["godmd"]
 __version__ = "4.2.0"

biobb_godmd/docs/source/change_log.md

@@ -1,5 +1,19 @@
 # Biobb GOdMD changelog
 
+## What's new in version [5.0.0](https://github.com/bioexcel/biobb_godmd/releases/tag/v5.0.0)?
+
+### Changes
+
+* [CI/CD](env.yaml): Update biobb_common version.
+* [CI/CD](linting_and_testing.yml): Update set-up micromamba.
+* [Typing](ALL): Update typing from python 3.8 style to python 3.9
+* [CI/CD](linting_and_testing): Update GA test workflow to Python >3.9
+* [TYPING](ALL): Fix typing errors
+* [DOCS](.readthedocs.yaml): Updating to Python 3.9
+* [FEATURE](__init__): Importing submodules when a module is loaded
+* [CI/CD](godmd): Adapting conf.yml to the new confReader
+
+
 ## What's new in version [4.2.0](https://github.com/bioexcel/biobb_godmd/releases/tag/v4.2.0)?
 In version 4.2.0 the dependency biobb_common has been updated to 4.2.0 version.