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Docs: Add ilastik basics to user guide #407

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Jun 13, 2024
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Docs: Add ilastik basics to user guide #407

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14 changes: 13 additions & 1 deletion docs/guides/user_guide.md
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Expand Up @@ -46,7 +46,19 @@ The configuration fields should be self-explanatory.


### Ilastik
TBD
In version 1.4.0, ilastik introduced the [Neural Network workflow](https://www.ilastik.org/documentation/nn/nn), which allows you to easily load models from the BioImage Model Zoo and run them on your images.

A [video tutorial](https://www.youtube.com/watch?v=PfXCKNhsOLw) demonstrating the workflow and how to load models is available on the ilastik team's [YouTube channel](https://www.youtube.com/@ilastikTeam).

The simplest steps to try it out are, in short:

1. Download and install the [newest ilastik version](https://www.ilastik.org/download)
2. Create a "Neural Network Classification (Local)" project
3. Select your input image(s)
4. Choose a suitable model from the BioImage Model Zoo, copy the model nickname
5. Paste the model nickname into ilastik
6. Run Live Prediction to preview the model's output on the currently displayed data
7. Export predictions for the full image

### ImJoy
TBD
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