Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

For #1523 check for unique GO ID #656

Merged
merged 2 commits into from
Nov 10, 2023

Conversation

mugitty
Copy link
Collaborator

@mugitty mugitty commented Nov 9, 2023

Updated to ensure that annotations with evidence code 'IC' have a GO Id entry in the 'with/from' field that is different from the GO Id for the annotation

Copy link
Collaborator

@dustine32 dustine32 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@mugitty Very minor/picky things to check in the code comments.

ontobio/io/qc.py Outdated Show resolved Hide resolved
ontobio/io/qc.py Outdated Show resolved Hide resolved
tests/test_qc.py Show resolved Hide resolved
@mugitty
Copy link
Collaborator Author

mugitty commented Nov 10, 2023

@dustine32 please review

@dustine32 dustine32 self-requested a review November 10, 2023 17:30
Copy link
Collaborator

@dustine32 dustine32 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@mugitty Thanks for the changes and for investigating the (non-existent) primary GO term checks! It looks like your fix for geneontology/go-site#2175 will ensure that go_id.namespace always equals "GO" in this test.

@mugitty mugitty merged commit 625ee02 into master Nov 10, 2023
5 checks passed
@mugitty mugitty deleted the go-site-1523-gorule-0000016-unique-goid branch May 6, 2024 17:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants