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Go site 2246 gorule 0000001 rnac rna types are getting mangled #676

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mugitty
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@mugitty mugitty commented Jun 11, 2024

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@mugitty mugitty requested review from dustine32 and kltm June 11, 2024 01:47
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kltm commented Jun 11, 2024

Noting geneontology/go-site#2246

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kltm commented Jun 11, 2024

@mugitty Should I wait until the tests pass for review?

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mugitty commented Jun 11, 2024

@mugitty Should I wait until the tests pass for review?

Please wait until tests pass

…ite-2246-gorule-0000001-rnac-rna-types-are-getting-mangled
mugitty added a commit that referenced this pull request Jun 11, 2024
mugitty added a commit that referenced this pull request Jun 11, 2024
mugitty added a commit that referenced this pull request Jun 11, 2024
mugitty added a commit that referenced this pull request Jun 11, 2024
mugitty added a commit that referenced this pull request Jun 11, 2024
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@mugitty Cool, looks like you fixed the tests! That failing tests/unit/test_clinical_mod.py test was removed from travis_test on master a few months ago so definitely wasn't your code's fault.

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mugitty commented Jun 11, 2024

@dustine32, I had to merge the updates from master

Thanks

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mugitty commented Jun 11, 2024

@kltm and @dustine32 I have updated the CURIE lookup table with latest updates requested by @pgaudet and restored previous updates to tests. Please review

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@mugitty Approved!

This matches what the issue geneontology/go-site#2246 asks for and the tests all pass. We can confirm this change's effects on a pipeline run.

@mugitty mugitty merged commit e574591 into master Jun 11, 2024
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pgaudet commented Jun 12, 2024

Great! Can we now have a list of the entity types that fail ? (ideally by group - ie 'assigned by')

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4 participants