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| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Home · GhostKnockoffGWAS</title><meta name="title" content="Home · GhostKnockoffGWAS"/><meta property="og:title" content="Home · GhostKnockoffGWAS"/><meta property="twitter:title" content="Home · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="assets/documenter.js"></script><script src="search_index.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href>GhostKnockoffGWAS</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li class="is-active"><a class="tocitem" href>Home</a></li><li><a class="tocitem" href="man/getting_started/">Getting started</a></li><li><a class="tocitem" href="man/examples/">Examples</a></li><li><a class="tocitem" href="man/FAQ/">FAQ</a></li><li><a class="tocitem" href="man/developer/">Developer documentation</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Home</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/index.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="GWAS-summary-statistics-analysis-via-Knockoff-filter"><a class="docs-heading-anchor" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter">GWAS summary statistics analysis via Knockoff-filter</a><a id="GWAS-summary-statistics-analysis-via-Knockoff-filter-1"></a><a class="docs-heading-anchor-permalink" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter" title="Permalink"></a></h1><p>This is package for performing knockoff-based analysis of GWAS summary statistics. The knockoff-filter finds conditionally independent discoveries while controlling the FDR (false discovery rate) to any specified level. </p><div class="admonition is-warning"><header class="admonition-header">Warning</header><div class="admonition-body"><p>This package currently only works on Linux platforms with <code>aarch64</code> or <code>x86_64</code> CPUs. We plan to support mac (<code>x86_64</code> and <code>aarch64</code>) in the near future, but not for windows. </p></div></div></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="man/getting_started/">Getting started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Monday 11 December 2023 18:03">Monday 11 December 2023</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> | ||
| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Home · GhostKnockoffGWAS</title><meta name="title" content="Home · GhostKnockoffGWAS"/><meta property="og:title" content="Home · GhostKnockoffGWAS"/><meta property="twitter:title" content="Home · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="assets/documenter.js"></script><script src="search_index.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href>GhostKnockoffGWAS</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li class="is-active"><a class="tocitem" href>Home</a></li><li><a class="tocitem" href="man/getting_started/">Getting started</a></li><li><a class="tocitem" href="man/examples/">Examples</a></li><li><a class="tocitem" href="man/FAQ/">FAQ</a></li><li><a class="tocitem" href="man/developer/">Developer documentation</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Home</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/index.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="GWAS-summary-statistics-analysis-via-Knockoff-filter"><a class="docs-heading-anchor" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter">GWAS summary statistics analysis via Knockoff-filter</a><a id="GWAS-summary-statistics-analysis-via-Knockoff-filter-1"></a><a class="docs-heading-anchor-permalink" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter" title="Permalink"></a></h1><p>This is package for performing knockoff-based analysis of GWAS summary statistics. The knockoff-filter finds conditionally independent discoveries while controlling the FDR (false discovery rate) to any specified level. </p><div class="admonition is-warning"><header class="admonition-header">Warning</header><div class="admonition-body"><p>This package currently only works on Linux platforms with <code>aarch64</code> or <code>x86_64</code> CPUs. We plan to support mac (<code>x86_64</code> and <code>aarch64</code>) in the near future, but not for windows. </p></div></div></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="man/getting_started/">Getting started »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Tuesday 12 December 2023 02:33">Tuesday 12 December 2023</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> |
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| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>FAQ · GhostKnockoffGWAS</title><meta name="title" content="FAQ · GhostKnockoffGWAS"/><meta property="og:title" content="FAQ · GhostKnockoffGWAS"/><meta property="twitter:title" content="FAQ · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="../../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="../.."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../../assets/documenter.js"></script><script src="../../search_index.js"></script><script src="../../siteinfo.js"></script><script src="../../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../../">GhostKnockoffGWAS</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../../">Home</a></li><li><a class="tocitem" href="../getting_started/">Getting started</a></li><li><a class="tocitem" href="../examples/">Examples</a></li><li class="is-active"><a class="tocitem" href>FAQ</a><ul class="internal"><li><a class="tocitem" href="#How-to-handle-missing-data?"><span>How to handle missing data?</span></a></li><li><a class="tocitem" href="#Memory-requirement?"><span>Memory requirement?</span></a></li></ul></li><li><a class="tocitem" href="../developer/">Developer documentation</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>FAQ</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>FAQ</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/man/FAQ.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Common-questions-and-Answers"><a class="docs-heading-anchor" href="#Common-questions-and-Answers">Common questions and Answers</a><a id="Common-questions-and-Answers-1"></a><a class="docs-heading-anchor-permalink" href="#Common-questions-and-Answers" title="Permalink"></a></h1><p>Here is a collection of common questions & answers. If you have a question not listed here, do not hesitate to open a new issue on Github. </p><h2 id="How-to-handle-missing-data?"><a class="docs-heading-anchor" href="#How-to-handle-missing-data?">How to handle missing data?</a><a id="How-to-handle-missing-data?-1"></a><a class="docs-heading-anchor-permalink" href="#How-to-handle-missing-data?" title="Permalink"></a></h2><h2 id="Memory-requirement?"><a class="docs-heading-anchor" href="#Memory-requirement?">Memory requirement?</a><a id="Memory-requirement?-1"></a><a class="docs-heading-anchor-permalink" href="#Memory-requirement?" title="Permalink"></a></h2></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../examples/">« Examples</a><a class="docs-footer-nextpage" href="../developer/">Developer documentation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Monday 11 December 2023 18:03">Monday 11 December 2023</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> | ||
| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>FAQ · GhostKnockoffGWAS</title><meta name="title" content="FAQ · GhostKnockoffGWAS"/><meta property="og:title" content="FAQ · GhostKnockoffGWAS"/><meta property="twitter:title" content="FAQ · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="../../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="../.."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../../assets/documenter.js"></script><script src="../../search_index.js"></script><script src="../../siteinfo.js"></script><script src="../../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../../">GhostKnockoffGWAS</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../../">Home</a></li><li><a class="tocitem" href="../getting_started/">Getting started</a></li><li><a class="tocitem" href="../examples/">Examples</a></li><li class="is-active"><a class="tocitem" href>FAQ</a><ul class="internal"><li><a class="tocitem" href="#How-to-handle-missing-data?"><span>How to handle missing data?</span></a></li><li><a class="tocitem" href="#Memory-requirement?"><span>Memory requirement?</span></a></li></ul></li><li><a class="tocitem" href="../developer/">Developer documentation</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>FAQ</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>FAQ</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/man/FAQ.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Common-questions-and-Answers"><a class="docs-heading-anchor" href="#Common-questions-and-Answers">Common questions and Answers</a><a id="Common-questions-and-Answers-1"></a><a class="docs-heading-anchor-permalink" href="#Common-questions-and-Answers" title="Permalink"></a></h1><p>Here is a collection of common questions & answers. If you have a question not listed here, do not hesitate to open a new issue on Github. </p><h2 id="How-to-handle-missing-data?"><a class="docs-heading-anchor" href="#How-to-handle-missing-data?">How to handle missing data?</a><a id="How-to-handle-missing-data?-1"></a><a class="docs-heading-anchor-permalink" href="#How-to-handle-missing-data?" title="Permalink"></a></h2><h2 id="Memory-requirement?"><a class="docs-heading-anchor" href="#Memory-requirement?">Memory requirement?</a><a id="Memory-requirement?-1"></a><a class="docs-heading-anchor-permalink" href="#Memory-requirement?" title="Permalink"></a></h2></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../examples/">« Examples</a><a class="docs-footer-nextpage" href="../developer/">Developer documentation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Tuesday 12 December 2023 02:33">Tuesday 12 December 2023</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> |
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| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Examples · GhostKnockoffGWAS</title><meta name="title" content="Examples · GhostKnockoffGWAS"/><meta property="og:title" content="Examples · GhostKnockoffGWAS"/><meta property="twitter:title" content="Examples · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="../../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="../.."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../../assets/documenter.js"></script><script src="../../search_index.js"></script><script src="../../siteinfo.js"></script><script src="../../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../../">GhostKnockoffGWAS</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../../">Home</a></li><li><a class="tocitem" href="../getting_started/">Getting started</a></li><li class="is-active"><a class="tocitem" href>Examples</a></li><li><a class="tocitem" href="../FAQ/">FAQ</a></li><li><a class="tocitem" href="../developer/">Developer documentation</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Examples</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Examples</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/man/examples.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Examples"><a class="docs-heading-anchor" href="#Examples">Examples</a><a id="Examples-1"></a><a class="docs-heading-anchor-permalink" href="#Examples" title="Permalink"></a></h1><p>This page collect examples of running the ghost knockoff pipeline. We will cover topics such as installation, examining input data, running the software, and visualizing the output. </p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../getting_started/">« Getting started</a><a class="docs-footer-nextpage" href="../FAQ/">FAQ »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Monday 11 December 2023 18:03">Monday 11 December 2023</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> | ||
| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Examples · GhostKnockoffGWAS</title><meta name="title" content="Examples · GhostKnockoffGWAS"/><meta property="og:title" content="Examples · GhostKnockoffGWAS"/><meta property="twitter:title" content="Examples · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="../../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="../.."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../../assets/documenter.js"></script><script src="../../search_index.js"></script><script src="../../siteinfo.js"></script><script src="../../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../../">GhostKnockoffGWAS</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../../">Home</a></li><li><a class="tocitem" href="../getting_started/">Getting started</a></li><li class="is-active"><a class="tocitem" href>Examples</a></li><li><a class="tocitem" href="../FAQ/">FAQ</a></li><li><a class="tocitem" href="../developer/">Developer documentation</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Examples</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Examples</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/man/examples.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Examples"><a class="docs-heading-anchor" href="#Examples">Examples</a><a id="Examples-1"></a><a class="docs-heading-anchor-permalink" href="#Examples" title="Permalink"></a></h1><p>This page collect examples of running the ghost knockoff pipeline. We will cover topics such as installation, examining input data, running the software, and visualizing the output. </p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../getting_started/">« Getting started</a><a class="docs-footer-nextpage" href="../FAQ/">FAQ »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Tuesday 12 December 2023 02:33">Tuesday 12 December 2023</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> |
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