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{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-12-04T03:11:27","documenter_version":"1.8.0"}}
{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-12-05T03:11:51","documenter_version":"1.8.0"}}
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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Home · GhostKnockoffGWAS</title><meta name="title" content="Home · GhostKnockoffGWAS"/><meta property="og:title" content="Home · GhostKnockoffGWAS"/><meta property="twitter:title" content="Home · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" 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href>Home</a></li><li><a class="tocitem" href="man/intro/">Introduction</a></li><li><a class="tocitem" href="man/documentation/">Documentation</a></li><li><a class="tocitem" href="man/download/">Downloads</a></li><li><a class="tocitem" href="man/examples/">Tutorial</a></li><li><a class="tocitem" href="man/solveblocks/">Customizing LD files</a></li><li><a class="tocitem" href="man/FAQ/">FAQ</a></li><li><a class="tocitem" href="man/julia/">Usage within Julia</a></li><li><a class="tocitem" href="man/developer/">Developer documentation</a></li><li><a class="tocitem" href="man/gallery/">Gallery</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Home</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/index.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="GWAS-summary-statistics-analysis-via-Knockoff-filter"><a class="docs-heading-anchor" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter">GWAS summary statistics analysis via Knockoff-filter</a><a id="GWAS-summary-statistics-analysis-via-Knockoff-filter-1"></a><a class="docs-heading-anchor-permalink" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter" title="Permalink"></a></h1><p>This is package for performing knockoff-based analysis of GWAS summary statistics. The knockoff-filter finds conditionally independent discoveries while controlling the FDR (false discovery rate) to any specified level. </p><p><img src="assets/GK_cover_modified.png" alt="cover"/></p><div class="admonition is-warning"><header class="admonition-header">Warning</header><div class="admonition-body"><p>This package currently only works on Linux platforms with <code>aarch64</code> or <code>x86_64</code> CPUs. We plan to support mac (<code>x86_64</code> and <code>aarch64</code>) in the near future, but not for windows. </p></div></div></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="man/intro/">Introduction »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Wednesday 4 December 2024 03:11">Wednesday 4 December 2024</span>. Using Julia version 1.9.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Home · GhostKnockoffGWAS</title><meta name="title" content="Home · GhostKnockoffGWAS"/><meta property="og:title" content="Home · GhostKnockoffGWAS"/><meta property="twitter:title" content="Home · GhostKnockoffGWAS"/><meta name="description" content="Documentation for GhostKnockoffGWAS."/><meta property="og:description" content="Documentation for GhostKnockoffGWAS."/><meta property="twitter:description" content="Documentation for GhostKnockoffGWAS."/><script data-outdated-warner src="assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" 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docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Home</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/biona001/GhostKnockoffGWAS/blob/main/docs/src/index.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="GWAS-summary-statistics-analysis-via-Knockoff-filter"><a class="docs-heading-anchor" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter">GWAS summary statistics analysis via Knockoff-filter</a><a id="GWAS-summary-statistics-analysis-via-Knockoff-filter-1"></a><a class="docs-heading-anchor-permalink" href="#GWAS-summary-statistics-analysis-via-Knockoff-filter" title="Permalink"></a></h1><p>This is package for performing knockoff-based analysis of GWAS summary statistics. The knockoff-filter finds conditionally independent discoveries while controlling the FDR (false discovery rate) to any specified level. </p><p><img src="assets/GK_cover_modified.png" alt="cover"/></p><div class="admonition is-warning"><header class="admonition-header">Warning</header><div class="admonition-body"><p>This package currently only works on Linux platforms with <code>aarch64</code> or <code>x86_64</code> CPUs. We plan to support mac (<code>x86_64</code> and <code>aarch64</code>) in the near future, but not for windows. </p></div></div></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="man/intro/">Introduction »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Thursday 5 December 2024 03:11">Thursday 5 December 2024</span>. Using Julia version 1.9.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
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