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PubMed: https://pubmed.ncbi.nlm.nih.gov/39592010/ Database: https://fanta.bio/ This pull requests curates a new prefix `fanta` which is a collection of functional genome annotations with transcriptional activities, specifically for cis-regulatory elements (CRE). --------- Co-authored-by: Benjamin M. Gyori <[email protected]>
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@@ -38112,6 +38112,39 @@ | |
| ], | ||
| "uri_format": "http://biohackathon.org/resource/faldo#$1" | ||
| }, | ||
| "fanta": { | ||
| "contact": { | ||
| "email": "[email protected]", | ||
| "name": "Takeya Kasukawa" | ||
| }, | ||
| "contributor": { | ||
| "email": "[email protected]", | ||
| "github": "nagutm", | ||
| "name": "Mufaddal Naguthanawala", | ||
| "orcid": "0009-0009-5240-7463" | ||
| }, | ||
| "description": "Functional annotations of genomes for studying gene regulation, with a primary focus on cis-regulatory elements (CREs) such as promoters and enhancers.", | ||
| "example": "FCHS_301358", | ||
| "github_request_issue": 1328, | ||
| "homepage": "https://fanta.bio", | ||
| "name": "Functional Genome Annotations with Transcriptional Activities", | ||
| "pattern": "^FC(HS|MM)_\\d+$", | ||
| "publications": [ | ||
| { | ||
| "doi": "10.1093/nar/gkae1047", | ||
| "pubmed": "39592010", | ||
| "title": "Update of the FANTOM web resource: enhancement for studying noncoding genomes", | ||
| "year": 2024 | ||
| } | ||
| ], | ||
| "reviewer": { | ||
| "email": "[email protected]", | ||
| "github": "bgyori", | ||
| "name": "Benjamin M. Gyori", | ||
| "orcid": "0000-0001-9439-5346" | ||
| }, | ||
| "uri_format": "https://fanta.bio/cre/$1" | ||
| }, | ||
| "fao": { | ||
| "aberowl": { | ||
| "description": "A structured controlled vocabulary for the anatomy of fungi.", | ||
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