Remove usage of deprecated code (#255)

biopragmatics · Dec 2, 2024 · a8253f5 · a8253f5
1 parent 13a7199
commit a8253f5
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Showing 3 changed files with 1 addition and 67 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -70,7 +70,7 @@ dependencies = [
     "bioversions>=0.5.561",
     "bioregistry>=0.11.23",
     "bioontologies>=0.5.2",
-    "zenodo-client>=0.0.5",
+    "zenodo-client>=0.3.6",
     "class_resolver",
     "psycopg2-binary",
     "pydantic>=2.0",

diff --git a/tests/test_extract.py b/tests/test_extract.py
diff --git a/tests/test_struct.py b/tests/test_struct.py
@@ -317,18 +317,6 @@ def test_alt(self) -> None:
             term.iterate_obo_lines(ontology_prefix="go", typedefs={RO_DUMMY.pair: RO_DUMMY}),
         )
 
-        term = Term(LYSINE_DEHYDROGENASE_ACT)
-        term.append_alt("1234569")
-        self.assert_lines(
-            """\
-            [Term]
-            id: GO:0050069
-            name: lysine dehydrogenase activity
-            alt_id: GO:1234569
-            """,
-            term.iterate_obo_lines(ontology_prefix="go", typedefs={RO_DUMMY.pair: RO_DUMMY}),
-        )
-
     def test_append_synonym(self) -> None:
         """Test appending a synonym."""
         term = Term(LYSINE_DEHYDROGENASE_ACT)