rm experimental val for base image

Dockerfile-base

@@ -17,32 +17,16 @@ WORKDIR /app
 RUN mkdir /app/data
 
 # copy deps
-COPY ./assets/requirements.base.txt ./assets/scripts/remove_deps.sh ./assets/scripts/update_deps.sh ./assets/dropped.txt /app/assets/
-# COPY ./uploads /app/uploads
+# COPY ./assets/requirements.base.txt ./assets/scripts/remove_deps.sh ./assets/scripts/update_deps.sh ./assets/dropped.txt /app/assets/
+COPY ./assets/requirements.base.txt ./assets/scripts/install_deps.sh /app/assets/
 
 # copy example files TODO: optimize this.
 COPY ./model-examples/sbml-core/Elowitz-Nature-2000-Repressilator.omex /app/data/Elowitz-Nature-2000-Repressilator.omex
 COPY ./model-examples/sbml-core/Elowitz-Nature-2000-Repressilator /app/data/Elowitz-Nature-2000-Repressilator
 
-# env specific deps
-RUN apt-get update && apt-get install -y \
-    build-essential \
-    cmake \
-    g++ \
-    libhdf5-dev \
-    libboost-all-dev \
-    swig \
-    python3-dev \
-    libatlas-base-dev \
-    libopenblas-dev \
-    liblapack-dev \
-    && apt-get clean
+RUN chmod +x /app/assets/install_deps.sh
 
-# Install pipenv and set up environment
-RUN pip install pipenv \
-    && pipenv install --system --deploy \
-    # && pipenv install --skip-lock \
-    && pipenv install -r /app/assets/requirements.base.txt
+# CMD ["pip", "install", "-r", "/app/assets/requirements.base.txt"]
 
 # RUN chmod +x /app/assets/remove_deps.sh \
 #     && chmod +x /app/assets/update_deps.sh \
@@ -53,13 +37,3 @@ RUN pip install pipenv \
 
 # shared tooling module
 # COPY ./assets/shared.py /app/shared.py
-
-# yes | docker system prune -a && yes | docker buildx prune -a \
-#   && docker build -f ./Dockerfile-base -t "$PKG_ROOT"-base:"$base_version" . \
-#   && docker tag "$PKG_ROOT"-base:"$base_version" "$PKG_ROOT"-base:latest \
-#   && docker build -f ./api/Dockerfile-api -t ghcr.io/biosimulators/bio-check-api:0.0.0 ./api \
-#   && docker build -f ./worker/Dockerfile-worker -t ghcr.io/biosimulators/bio-check-worker:0.0.0 ./worker
-
-
-# docker run --name worker --platform linux/amd64 -it ghcr.io/biosimulators/bio-check-worker:0.0.0 \
-#   && docker run --name api --platform linux/amd64 -it ghcr.io/biosimulators/bio-check-api:0.0.0