Deployment Pipeline #2

	name: Deployment Pipeline

	on:
	workflow_dispatch:


	jobs:
	integration:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.10'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install .

	- name: Test BioCompose
	run: \|
	pytest tests/main.py

	deployment:
	runs-on: ubuntu-latest
	needs: integration
	steps:
	- name: Checkout code
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.10'

	- name: Install Poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python3 -
	echo "export PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV
	source $GITHUB_ENV

	- name: Install dependencies
	run: \|
	poetry install

	- name: Extract project version
	run: \|
	VERSION=$(poetry run python -c "import toml; print(toml.load('pyproject.toml')['tool']['poetry']['version'])")
	echo "VERSION=$VERSION" >> $GITHUB_ENV

	# - name: Build Documentation
	# run: \|
	# make -C documentation clean
	# make -C documentation html

	# - name: Create new github tags
	# run: \|
	# git tag -m "Version v${{ env.VERSION }}" "v${{ env.VERSION }}"
	# git push --tags

	- name: Publish new version on PyPI
	run: \|
	poetry build
	sudo rm -rf bio_compose/__pycache__
	poetry publish --username __token__ --password ${{ secrets.ADMIN_PYPI_TOKEN }}

	- name: Notify Deployment
	run: echo "Version ${{ env.VERSION }} as been published on PyPI with release ${{ github.ref }}"

Provide feedback