Fox for issue jessiewu#9 - replacing .snp.annotation.txt with .ttp.an…

…notation.txt.
blawlor · Aug 5, 2017 · e55d7e9 · e55d7e9
1 parent 4fbd34a
commit e55d7e9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snpGWAS/SNP_GWAS_MAIN.R b/snpGWAS/SNP_GWAS_MAIN.R
@@ -582,7 +582,7 @@ runGetAnnotationsTriTetra = function(
 	inputLogFilePath = NULL){
 
 	system(paste(c("Rscript", getAnnotationsTritetraR, snpinfo, ref_fa, ref_gbk, prefix), collapse=" "))
-	snpAnnotPath = paste(c(formatDir(getwd()),prefix,".snp.annotation.txt"),collapse="")
+	snpAnnotPath = paste(c(formatDir(getwd()),prefix,".ttp.annotation.txt"),collapse="")
 	message(snpAnnotPath)
 	checkExistence(snpAnnotPath, "The snp annotation file has not been created correctly by the get_annotations_tritetra_chw.R")
 	cat(paste0("Tri and tetra allelic SNP annotation completed: ",Sys.time()),