wip

.devcontainer/install.R

@@ -4,8 +4,10 @@
 # We could use renv.lock approach here instead, but will force re-creation of environment from scratch
 # Does not provide a good way to ensure that sf/terra/gdalcubes are installed from source while other packages can be binary
 
-install.packages(c("rstac", "spData", "earthdatalogin", "quarto"))
-remotes::install_github('r-tmap/tmap')
+install.packages(c("rstac", "spData", "earthdatalogin", "quarto", "pak"))
+pak::pkg_install('github::r-tmap/tmap')
+
+# vscode and jupyter plugins
+#install.packages(c("IRkernel", "languageserver", "httpgd"))
+#IRkernel::installspec()
 
-install.packages(c("IRkernel", "languageserver", "httpgd"))
-IRkernel::installspec()

.devcontainer/jupyter-requirements.txt

@@ -0,0 +1,32 @@
+ipykernel
+ipython
+ipywidgets
+jupyter
+jupyter-console
+jupyter-events
+jupyter-lsp
+jupyter_client
+jupyter_core
+jupyter_server
+jupyter_server_terminals
+jupyterlab
+jupyterlab-pygments
+jupyterlab-widgets
+jupyterlab_server
+nbclient
+nbconvert
+nbformat
+notebook
+notebook_shim
+pandocfilters
+Glances
+# extensions
+jupyterlab-git
+jupyter-tensorboard-proxy 
+jupyter-resource-usage
+jupyter-vscode-proxy
+jupyter-book
+jupyterlab_myst
+gh-scoped-creds
+jupyter-server-proxy
+

.devcontainer/jupyterhub.Dockerfile

@@ -0,0 +1,38 @@
+## devcontainer-focused Rocker
+FROM ghcr.io/rocker-org/devcontainer/tidyverse:4.3
+
+## latest version of geospatial libs
+RUN /rocker_scripts/experimental/install_dev_osgeo.sh
+RUN apt-get update -qq && apt-get -y install vim
+
+# standard python/jupyter setup
+ENV NB_USER=rstudio
+ENV VIRTUAL_ENV=/opt/venv
+ENV PATH=${VIRTUAL_ENV}/bin:${PATH}
+RUN /rocker_scripts/install_python.sh && \
+  chown ${NB_USER}:staff -R ${VIRTUAL_ENV}
+
+# podman doesn't not understand group permissions
+RUN chown ${NB_USER}:staff -R ${R_HOME}/site-library
+
+# some teaching preferences
+RUN git config --system pull.rebase false && \
+    git config --system credential.helper 'cache --timeout=36000'
+
+## codeserver
+RUN curl -fsSL https://code-server.dev/install.sh | sh
+
+USER rstudio
+WORKDIR /home/rstudio
+RUN usermod -s /bin/bash rstudio
+ENV PATH=$PATH:/home/rstudio/.local/bin
+
+COPY jupyter-requirements.txt jupyter-requirements.txt
+RUN python -m pip install -r jupyter-requirements.txt && rm jupyter-requirements.txt
+
+COPY nasa-requirements.txt requirements.txt
+RUN python -m pip install -r requirements.txt && rm requirements.txt
+
+COPY install.R install.R
+RUN Rscript install.R && rm install.R
+

.devcontainer/nasa-requirements.txt

@@ -0,0 +1,31 @@
+jupyterhub
+jupyterlab
+notebook
+jupyter-rsession-proxy
+jupyter-console==6.6.3
+jupyter-events==0.7.0
+jupyter-lsp==2.2.0
+jupyter_client==8.3.1
+jupyter_core==5.3.2
+jupyter_server==2.7.3
+jupyter_server_terminals==0.4.4
+jupyter-vscode-proxy==0.5
+jupyterlab-pygments==0.2.2
+jupyterlab-widgets==3.0.9
+jupyterlab_server==2.25.0
+nbconvert==7.8.0
+nbformat==5.9.2
+odc-stac==0.3.8
+planetary-computer==1.0.0
+polars
+pyarrow
+pystac-client==0.7.5
+gh-scoped-creds
+scikit-image
+hvplot
+geoviews
+earthaccess
+pyresample
+contextily
+pygeoweaver
+

.github/workflows/test-build.yaml

@@ -0,0 +1,27 @@
+on:
+  workflow_dispatch:
+  push:
+    branches: main
+  schedule:
+        - cron: "0 0 1 * *" # monthly
+
+name: Quarto Test Build
+
+jobs:
+  build-deploy:
+    runs-on: ubuntu-latest
+    container: 
+      image: ghcr.io/eeholmes/earthdata-cloud-cookbook/cookbook:latest
+      options: --user root --security-opt seccomp=unconfined
+    permissions:
+      contents: write
+    steps:
+      - name: Quarto-inside-docker permissions
+        run: git config --system --add safe.directory '*'
+
+      - name: Check out repository
+        uses: actions/checkout@v3
+
+      - name: Render
+        run: |
+             quarto render --no-cache