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Migrate documentation website to docfx #33

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cf797dd
initial draft for new docs migration - added .bonsai env, setup docf…
banchan86 Apr 21, 2024
bb201f9
added docfx-tools submodule (banchan86 fork), modified src folder to …
banchan86 Apr 22, 2024
1d823a3
added .gitignore to api folder to filter out automatically generated …
banchan86 Apr 22, 2024
0768b15
added .github, template, build.ps1 files necessary for building websi…
banchan86 Apr 23, 2024
f195b15
removed extra packages added to Bonvision from extensions.csproj whic…
banchan86 Apr 23, 2024
23a15ec
added missing workflows folder that was interupting github actions build
banchan86 Apr 23, 2024
7da3527
minor fix to address build errors
banchan86 Apr 23, 2024
84c67db
updates to site infrastructure including icon, github workflows, docf…
banchan86 Apr 29, 2024
84e3ff0
updated site logo and landing page
banchan86 Apr 29, 2024
22638c9
added display environment, stimulus generation articles
banchan86 Apr 29, 2024
d9c7dfc
reorganised TOC and adjusted icon size
banchan86 Apr 29, 2024
4da06a4
updated site logo and toc organization
banchan86 Apr 29, 2024
2c91542
updated site logo
banchan86 Apr 29, 2024
efb812c
added bonsai workflows to workflow overview article, resized site log…
banchan86 Apr 30, 2024
a233084
added favicon, VR demo article, updated bonsai.config to add missing …
banchan86 Apr 30, 2024
472a1cb
test api docs custom yml, adjust padding of title and site logo
banchan86 Apr 30, 2024
737db5c
added API landing page, added overwrite file for BonVision Primitive …
banchan86 Apr 30, 2024
72f4f5e
bug fix to placeholder cs file to avoid build error
banchan86 Apr 30, 2024
2c13357
removed numerics and windows input package from installation instruc…
banchan86 May 9, 2024
9eb431a
added sweeping/looming demo to demos
banchan86 May 10, 2024
d5539d0
added sweeping/looming demo to demos
banchan86 May 10, 2024
38dc82f
reorganized TOC
banchan86 May 10, 2024
16014f0
added primitives to draw stimuli article and video links throughout
banchan86 May 10, 2024
8b91e79
adjusted video sizes and toc spelling error
banchan86 May 10, 2024
814b4ef
test fix for youtube video scaling issue on mobile
banchan86 May 10, 2024
fb00e29
test fix 2 for youtube video scaling issue on mobile
banchan86 May 10, 2024
593bb18
updated close loop article
banchan86 May 10, 2024
968af73
fix to div element for video resizing on mobile
banchan86 May 10, 2024
8e7a31e
propagated mobile youtube video resize fix to all videos, added faq a…
banchan86 May 10, 2024
6bb4774
added timing stimuli article, tidied up formating for multiple stimu…
banchan86 May 11, 2024
f11513d
test another mobile video fix that might be neater
banchan86 May 13, 2024
d16c601
added animation article, minor fixs to other articles
banchan86 May 13, 2024
2c6249b
minor formatting changes to articles and added draw-region article
banchan86 May 24, 2024
8b015e0
added new 2AFC demo
banchan86 May 25, 2024
58c02cd
expanded included workflow in 2AFC demo because it wasnt being copied…
banchan86 May 25, 2024
7b76bb4
updated gamma calibration article
banchan86 May 25, 2024
7d46948
fixed typo in gamma calibration workflow and added display position c…
banchan86 May 27, 2024
8990e43
added meshmapping article
banchan86 May 28, 2024
ae46cca
added Bonsai.Arduino package to bonsai.config to fix missing node in …
banchan86 May 28, 2024
870818a
adding logging article
banchan86 May 29, 2024
3e7098b
updated 3D scenes models and scenes section for draw stimuli article!
banchan86 May 31, 2024
918935e
updates to draw-stimuli article
banchan86 May 31, 2024
dbed8f3
updated alt text for workflows and minor formatting
banchan86 May 31, 2024
06974ee
updates to multiple-stimuli article and other minor edits
banchan86 Jun 1, 2024
66d67b2
split stimulus generation article into mapping and display article an…
banchan86 Jun 1, 2024
4764522
removed unnecessary files
banchan86 Jun 1, 2024
c52eda3
restored deleted gitignore file
banchan86 Jun 1, 2024
81b371b
added CSV loading to alternative stimuli creation article
banchan86 Jun 1, 2024
58cd191
updates to basic workflow, define display, and drawing region article…
banchan86 Jun 6, 2024
53bf5c6
added syncing article, removed notes from existing articles, minor ed…
banchan86 Jun 9, 2024
8a17ff7
update drawing-region article
banchan86 Jun 27, 2024
87ca9f4
reorganize map stimuli and display env article for clarity
banchan86 Jun 28, 2024
89241af
add sparse noise section and minor content edits
banchan86 Jul 1, 2024
cb4a3b1
rework api landing page to categorise nodes
banchan86 Jul 1, 2024
83c9204
update create window article
banchan86 Jul 1, 2024
2456a36
test custom api toc
banchan86 Jul 6, 2024
b4b2fe1
Update docfx switch docfx-tools to dev version
banchan86 Sep 22, 2024
f8f7cbf
Test new api template
banchan86 Oct 10, 2024
faf5e55
Remove custom API TOC
banchan86 Oct 10, 2024
36cb4c0
Add .bonsai files to docfx.json build section
banchan86 Oct 11, 2024
6f1755b
Remove docfx-tools submodule & includeworkflow plugin
banchan86 Oct 13, 2024
9fd653a
Update submodule with includeworkflow plugin
banchan86 Oct 13, 2024
f970d15
Switch docfx-tools submodule to dev version
banchan86 Oct 14, 2024
1328522
update docfx-tools submodule
banchan86 Nov 4, 2024
cab91de
Add function to pull property description from C# files
banchan86 Nov 7, 2024
38f27e2
Updates to support includeworkflow plugin
banchan86 Nov 9, 2024
2edc0c7
refine package property extraction
banchan86 Nov 13, 2024
124df33
Update docfx-tools submodule
banchan86 Nov 15, 2024
5bc9662
Remove DrawCircle apidoc, add operator workflows for API template
banchan86 Nov 15, 2024
f9f5964
Fix misnamed operator workflows
banchan86 Nov 15, 2024
d71871b
Remove redundant lines in docfx.json
banchan86 Nov 16, 2024
28831df
Modify GitHub actions and build.ps1 to support Workflow patch
banchan86 Nov 16, 2024
3acaa9e
Fix Github actions workflow
banchan86 Nov 16, 2024
80ae9b3
Remove cache from github actions workflow
banchan86 Nov 16, 2024
d9e450a
Update docfx-tools submodule
banchan86 Nov 19, 2024
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3 changes: 3 additions & 0 deletions .bonsai/.gitignore
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@@ -0,0 +1,3 @@
*.exe
*.exe.*
Packages
111 changes: 111 additions & 0 deletions .bonsai/Bonsai.config
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@@ -0,0 +1,111 @@
<?xml version="1.0" encoding="utf-8"?>
<PackageConfiguration xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<Packages>
<Package id="AssimpNet" version="4.1.0" />
<Package id="Bonsai" version="2.8.5" />
<Package id="Bonsai.Arduino" version="2.8.1" />
<Package id="Bonsai.Core" version="2.8.5" />
<Package id="Bonsai.Design" version="2.8.5" />
<Package id="Bonsai.Dsp" version="2.7.0" />
<Package id="Bonsai.Editor" version="2.8.5" />
<Package id="Bonsai.Numerics" version="0.7.0" />
<Package id="Bonsai.Scripting.Expressions" version="2.7.0" />
<Package id="Bonsai.Shaders" version="0.26.0" />
<Package id="Bonsai.Shaders.Design" version="0.26.0" />
<Package id="Bonsai.Shaders.Rendering" version="0.3.0" />
<Package id="Bonsai.System" version="2.8.1" />
<Package id="Bonsai.System.Design" version="2.7.0" />
<Package id="Bonsai.Vision" version="2.7.0" />
<Package id="Bonsai.VR" version="0.6.0" />
<Package id="BonVision" version="0.11.0" />
<Package id="jacobslusser.ScintillaNET" version="3.6.3" />
<Package id="Markdig" version="0.18.1" />
<Package id="MathNet.Numerics" version="4.5.1" />
<Package id="Microsoft.Web.WebView2" version="1.0.1823.32" />
<Package id="OpenCV.Net" version="3.4.1" />
<Package id="OpenTK" version="3.1.0" />
<Package id="Rx-Core" version="2.2.5" />
<Package id="Rx-Interfaces" version="2.2.5" />
<Package id="Rx-Linq" version="2.2.5" />
<Package id="Rx-PlatformServices" version="2.2.5" />
<Package id="SvgNet" version="3.3.3" />
<Package id="System.Buffers" version="4.5.1" />
<Package id="System.Linq.Dynamic" version="1.0.7" />
<Package id="System.Memory" version="4.5.5" />
<Package id="System.Numerics.Vectors" version="4.5.0" />
<Package id="System.Resources.Extensions" version="8.0.0" />
<Package id="System.Runtime.CompilerServices.Unsafe" version="4.5.3" />
<Package id="YamlDotNet" version="13.1.1" />
</Packages>
<AssemblyReferences>
<AssemblyReference assemblyName="Bonsai" />
<AssemblyReference assemblyName="Bonsai.Arduino" />
<AssemblyReference assemblyName="Bonsai.Core" />
<AssemblyReference assemblyName="Bonsai.Design" />
<AssemblyReference assemblyName="Bonsai.Dsp" />
<AssemblyReference assemblyName="Bonsai.Editor" />
<AssemblyReference assemblyName="Bonsai.Numerics" />
<AssemblyReference assemblyName="Bonsai.Scripting.Expressions" />
<AssemblyReference assemblyName="Bonsai.Shaders" />
<AssemblyReference assemblyName="Bonsai.Shaders.Design" />
<AssemblyReference assemblyName="Bonsai.Shaders.Rendering" />
<AssemblyReference assemblyName="Bonsai.System" />
<AssemblyReference assemblyName="Bonsai.System.Design" />
<AssemblyReference assemblyName="Bonsai.Vision" />
<AssemblyReference assemblyName="Bonsai.VR" />
<AssemblyReference assemblyName="BonVision" />
</AssemblyReferences>
<AssemblyLocations>
<AssemblyLocation assemblyName="AssimpNet" processorArchitecture="MSIL" location="Packages/AssimpNet.4.1.0/lib/net40/AssimpNet.dll" />
<AssemblyLocation assemblyName="Bonsai" processorArchitecture="MSIL" location="Packages/Bonsai.2.8.5/lib/net48/Bonsai.exe" />
<AssemblyLocation assemblyName="Bonsai.Arduino" processorArchitecture="MSIL" location="Packages/Bonsai.Arduino.2.8.1/lib/net462/Bonsai.Arduino.dll" />
<AssemblyLocation assemblyName="Bonsai.Core" processorArchitecture="MSIL" location="Packages/Bonsai.Core.2.8.5/lib/net462/Bonsai.Core.dll" />
<AssemblyLocation assemblyName="Bonsai.Design" processorArchitecture="MSIL" location="Packages/Bonsai.Design.2.8.5/lib/net462/Bonsai.Design.dll" />
<AssemblyLocation assemblyName="Bonsai.Dsp" processorArchitecture="MSIL" location="Packages/Bonsai.Dsp.2.7.0/lib/net462/Bonsai.Dsp.dll" />
<AssemblyLocation assemblyName="Bonsai.Editor" processorArchitecture="MSIL" location="Packages/Bonsai.Editor.2.8.5/lib/net472/Bonsai.Editor.dll" />
<AssemblyLocation assemblyName="Bonsai.Numerics" processorArchitecture="MSIL" location="Packages/Bonsai.Numerics.0.7.0/lib/net462/Bonsai.Numerics.dll" />
<AssemblyLocation assemblyName="Bonsai.Scripting.Expressions" processorArchitecture="MSIL" location="Packages/Bonsai.Scripting.Expressions.2.7.0/lib/net462/Bonsai.Scripting.Expressions.dll" />
<AssemblyLocation assemblyName="Bonsai.Shaders" processorArchitecture="MSIL" location="Packages/Bonsai.Shaders.0.26.0/lib/net462/Bonsai.Shaders.dll" />
<AssemblyLocation assemblyName="Bonsai.Shaders.Design" processorArchitecture="MSIL" location="Packages/Bonsai.Shaders.Design.0.26.0/lib/net462/Bonsai.Shaders.Design.dll" />
<AssemblyLocation assemblyName="Bonsai.Shaders.Rendering" processorArchitecture="MSIL" location="Packages/Bonsai.Shaders.Rendering.0.3.0/lib/net462/Bonsai.Shaders.Rendering.dll" />
<AssemblyLocation assemblyName="Bonsai.System" processorArchitecture="MSIL" location="Packages/Bonsai.System.2.8.1/lib/net462/Bonsai.System.dll" />
<AssemblyLocation assemblyName="Bonsai.System.Design" processorArchitecture="MSIL" location="Packages/Bonsai.System.Design.2.7.0/lib/net462/Bonsai.System.Design.dll" />
<AssemblyLocation assemblyName="Bonsai.Vision" processorArchitecture="MSIL" location="Packages/Bonsai.Vision.2.7.0/lib/net462/Bonsai.Vision.dll" />
<AssemblyLocation assemblyName="Bonsai.VR" processorArchitecture="MSIL" location="Packages/Bonsai.VR.0.6.0/lib/net45/Bonsai.VR.dll" />
<AssemblyLocation assemblyName="BonVision" processorArchitecture="MSIL" location="Packages/BonVision.0.11.0/lib/net462/BonVision.dll" />
<AssemblyLocation assemblyName="Markdig" processorArchitecture="MSIL" location="Packages/Markdig.0.18.1/lib/net40/Markdig.dll" />
<AssemblyLocation assemblyName="MathNet.Numerics" processorArchitecture="MSIL" location="Packages/MathNet.Numerics.4.5.1/lib/net461/MathNet.Numerics.dll" />
<AssemblyLocation assemblyName="Microsoft.Web.WebView2.Core" processorArchitecture="MSIL" location="Packages/Microsoft.Web.WebView2.1.0.1823.32/lib/net45/Microsoft.Web.WebView2.Core.dll" />
<AssemblyLocation assemblyName="Microsoft.Web.WebView2.WinForms" processorArchitecture="MSIL" location="Packages/Microsoft.Web.WebView2.1.0.1823.32/lib/net45/Microsoft.Web.WebView2.WinForms.dll" />
<AssemblyLocation assemblyName="Microsoft.Web.WebView2.Wpf" processorArchitecture="MSIL" location="Packages/Microsoft.Web.WebView2.1.0.1823.32/lib/net45/Microsoft.Web.WebView2.Wpf.dll" />
<AssemblyLocation assemblyName="OpenCV.Net" processorArchitecture="MSIL" location="Packages/OpenCV.Net.3.4.1/lib/net462/OpenCV.Net.dll" />
<AssemblyLocation assemblyName="OpenTK" processorArchitecture="MSIL" location="Packages/OpenTK.3.1.0/lib/net20/OpenTK.dll" />
<AssemblyLocation assemblyName="ScintillaNET" processorArchitecture="MSIL" location="Packages/jacobslusser.ScintillaNET.3.6.3/lib/net40/ScintillaNET.dll" />
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<AssemblyLocation assemblyName="System.Resources.Extensions" processorArchitecture="MSIL" location="Packages/System.Resources.Extensions.8.0.0/lib/net462/System.Resources.Extensions.dll" />
<AssemblyLocation assemblyName="System.Runtime.CompilerServices.Unsafe" processorArchitecture="MSIL" location="Packages/System.Runtime.CompilerServices.Unsafe.4.5.3/lib/net461/System.Runtime.CompilerServices.Unsafe.dll" />
<AssemblyLocation assemblyName="YamlDotNet" processorArchitecture="MSIL" location="Packages/YamlDotNet.13.1.1/lib/net47/YamlDotNet.dll" />
</AssemblyLocations>
<LibraryFolders>
<LibraryFolder path="Packages/AssimpNet.4.1.0/runtimes/win-x64/native" platform="x64" />
<LibraryFolder path="Packages/AssimpNet.4.1.0/runtimes/win-x86/native" platform="x86" />
<LibraryFolder path="Packages/Bonsai.VR.0.6.0/build/native/bin/Win32" platform="x86" />
<LibraryFolder path="Packages/Bonsai.VR.0.6.0/build/native/bin/x64" platform="x64" />
<LibraryFolder path="Packages/Microsoft.Web.WebView2.1.0.1823.32/runtimes/win-arm64/native" platform="arm64" />
<LibraryFolder path="Packages/Microsoft.Web.WebView2.1.0.1823.32/runtimes/win-arm64/native_uap" platform="arm64" />
<LibraryFolder path="Packages/Microsoft.Web.WebView2.1.0.1823.32/runtimes/win-x64/native" platform="x64" />
<LibraryFolder path="Packages/Microsoft.Web.WebView2.1.0.1823.32/runtimes/win-x64/native_uap" platform="x64" />
<LibraryFolder path="Packages/Microsoft.Web.WebView2.1.0.1823.32/runtimes/win-x86/native" platform="x86" />
<LibraryFolder path="Packages/Microsoft.Web.WebView2.1.0.1823.32/runtimes/win-x86/native_uap" platform="x86" />
<LibraryFolder path="Packages/OpenCV.Net.3.4.1/runtimes/win-x64/native/vc14/bin" platform="x64" />
<LibraryFolder path="Packages/OpenCV.Net.3.4.1/runtimes/win-x86/native/vc14/bin" platform="x86" />
</LibraryFolders>
</PackageConfiguration>
8 changes: 8 additions & 0 deletions .bonsai/NuGet.config
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
<?xml version="1.0" encoding="utf-8"?>
<configuration>
<packageSources>
<add key="Gallery" value="Gallery" />
<add key="Bonsai Packages" value="https://www.myget.org/F/bonsai/api/v3/index.json" />
<add key="Community Packages" value="https://www.myget.org/F/bonsai-community/api/v3/index.json" />
</packageSources>
</configuration>
4 changes: 4 additions & 0 deletions .bonsai/Setup.cmd
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
@echo off
pushd %~dp0
powershell -ExecutionPolicy Bypass -File ./Setup.ps1
popd
21 changes: 21 additions & 0 deletions .bonsai/Setup.ps1
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
Push-Location $PSScriptRoot
if (!(Test-Path "./Bonsai.exe")) {
$release = "https://github.com/bonsai-rx/bonsai/releases/latest/download/Bonsai.zip"
$configPath = "./Bonsai.config"
if (Test-Path $configPath) {
[xml]$config = Get-Content $configPath
$bootstrapper = $config.PackageConfiguration.Packages.Package.where{$_.id -eq 'Bonsai'}
if ($bootstrapper) {
$version = $bootstrapper.version
$release = "https://github.com/bonsai-rx/bonsai/releases/download/$version/Bonsai.zip"
}
}
Invoke-WebRequest $release -OutFile "temp.zip"
Move-Item -Path "NuGet.config" "temp.config" -ErrorAction SilentlyContinue
Expand-Archive "temp.zip" -DestinationPath "." -Force
Move-Item -Path "temp.config" "NuGet.config" -Force -ErrorAction SilentlyContinue
Remove-Item -Path "temp.zip"
Remove-Item -Path "Bonsai32.exe"
}
& .\Bonsai.exe --no-editor
Pop-Location
12 changes: 12 additions & 0 deletions .config/dotnet-tools.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
{
"version": 1,
"isRoot": true,
"tools": {
"docfx": {
"version": "2.77.0",
"commands": [
"docfx"
]
}
}
}
28 changes: 28 additions & 0 deletions .github/workflows/build.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
name: Build

on:
push:
branches: [ main ]
pull_request:
branches: [ main ]

jobs:
build:
name: Build Solution
runs-on: windows-latest

steps:
- name: Checkout
uses: actions/checkout@v3

- name: Setup MSBuild
uses: microsoft/setup-msbuild@v1

- name: Setup NuGet
uses: NuGet/[email protected]

- name: Restore NuGet Packages
run: nuget restore src/BonVision.sln

- name: Build Solution
run: msbuild src/BonVision.sln /p:Configuration=Release
59 changes: 59 additions & 0 deletions .github/workflows/docs.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,59 @@
# Builds and publishes the documentation website to gh-pages branch
name: Build docs

on:
workflow_dispatch:

jobs:
build:
runs-on: windows-latest
steps:
- name: Checkout
uses: actions/[email protected]
with:
submodules: true

- name: Setup .NET Core SDK
uses: actions/[email protected]
with:
dotnet-version: 8.x

- name: Setup MSBuild
uses: microsoft/setup-msbuild@v2

- name: Restore NuGet Packages
run: msbuild -t:restore src/BonVision.sln

- name: Build Solution
run: msbuild src/BonVision.sln /p:Configuration=Release

- name: Setup DocFX
run: dotnet tool restore

- name: Setup Bonsai
working-directory: .bonsai
run: .\Setup.ps1

- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: '3.12'

- name: Setup Pyyaml
run: pip install pyyaml==6.0.2

- name: Build Documentation
working-directory: docs
run: .\build.ps1

- name: Checkout gh-pages
uses: actions/[email protected]
with:
ref: gh-pages
path: gh-pages
- name: Publish to github pages
uses: peaceiris/[email protected]
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: docs/_site
force_orphan: true
10 changes: 9 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
@@ -1,4 +1,12 @@
.vs
.venv
bin
obj
packages
packages
*.orig
*.user
*.suo
*.exe
*.exe.settings
*.exe.old
*.dll
4 changes: 4 additions & 0 deletions .gitmodules
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
[submodule "docs/bonsai"]
path = docs/bonsai
url = https://github.com/banchan86/docfx-tools_dev
branch = api-template-includeworkflow
13 changes: 0 additions & 13 deletions Extensions.csproj

This file was deleted.

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