Fix bad merge #4252
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| name: Tests | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| # run sunday moring | |
| - cron: '30 6 * * 0' | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| standard_tests: | |
| timeout-minutes: 60 | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| env: | |
| BOUT_TEST_TIMEOUT: "6m" | |
| PETSC_DIR: /usr/lib/petscdir/petsc3.12/x86_64-linux-gnu-real | |
| PETSC_ARCH: "" | |
| SLEPC_DIR: /usr/lib/slepcdir/slepc3.12/x86_64-linux-gnu-real/ | |
| SLEPC_ARCH: "" | |
| OMP_NUM_THREADS: ${{ matrix.config.omp_num_threads }} | |
| PYTHONPATH: ${{ github.workspace }}/tools/pylib | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| PRTE_MCA_rmaps_default_mapping_policy: ":oversubscribe" | |
| MPIRUN: mpiexec -np | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| # Need this to be able to exclude the coverage job | |
| is_master_or_next: | |
| - ${{ github.ref == 'refs/heads/master' || github.ref == 'refs/heads/next' || github.base_ref == 'master' || github.base_ref == 'next' }} | |
| is_cron: | |
| - ${{ github.event_name == 'cron' }} | |
| config: | |
| - name: "CMake, PETSc unreleased, ADIOS2" | |
| os: ubuntu-24.04 | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_METRIC_3D=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_USE_ADIOS2=ON | |
| -DBOUT_ENABLE_PYTHON=ON | |
| -DADIOS2_ROOT=/home/runner/local/adios2 | |
| -DSUNDIALS_ROOT=/home/runner/local | |
| -DPETSC_DIR=/home/runner/local/petsc | |
| -DSLEPC_DIR=/home/runner/local/slepc" | |
| build_petsc: -petsc-main | |
| build_petsc_branch: main | |
| build_adios2: true | |
| on_cron: true | |
| - name: "Default options, Ubuntu 22.04" | |
| os: ubuntu-22.04 | |
| cmake_options: "" | |
| on_cron: false | |
| - name: "Optimised, static" | |
| os: ubuntu-latest | |
| cmake_options: "-DCHECK=0 | |
| -DBUILD_SHARED_LIBS=OFF | |
| -DCMAKE_CXX_FLAGS=-Ofast | |
| -DBOUT_ENABLE_SIGNAL=OFF | |
| -DBOUT_ENABLE_TRACK=OFF | |
| -DBOUT_ENABLE_BACKTRACE=OFF | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| on_cron: false | |
| - name: "Debug, shared" | |
| os: ubuntu-latest | |
| cmake_options: "-DCHECK=3 | |
| -DCMAKE_BUILD_TYPE=Debug | |
| -DBOUT_ENABLE_SIGNAL=ON | |
| -DBOUT_ENABLE_TRACK=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| on_cron: false | |
| - name: "Shared, release" | |
| os: ubuntu-latest | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DCMAKE_BUILD_TYPE=Release | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_BUILD_DOCS=OFF | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| omp_num_threads: 2 | |
| on_cron: false | |
| - name: "Shared, OpenMP, 3D metrics" | |
| os: ubuntu-latest | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_METRIC_3D=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_ENABLE_PYTHON=ON | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| omp_num_threads: 2 | |
| on_cron: false | |
| - name: "CMake, new PETSc" | |
| os: ubuntu-latest | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_METRIC_3D=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_ENABLE_PYTHON=ON | |
| -DSUNDIALS_ROOT=/home/runner/local | |
| -DPETSC_DIR=/home/runner/local/petsc | |
| -DSLEPC_DIR=/home/runner/local/slepc" | |
| build_petsc: -petsc | |
| on_cron: false | |
| - name: "Coverage" | |
| os: ubuntu-latest | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DCMAKE_BUILD_TYPE=Debug | |
| -DCHECK=3 | |
| -DENABLE_COVERAGE=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_HDF5=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_ENABLE_PYTHON=ON | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| unit_only: YES | |
| on_cron: false | |
| exclude: | |
| # Don't run the coverage tests if the branch isn't master or next | |
| - is_master_or_next: false | |
| config: | |
| name: "Coverage" | |
| - is_cron: true | |
| config: | |
| on_cron: false | |
| steps: | |
| - name: Job information | |
| run: | | |
| echo Build: ${{ matrix.config.name }}, ${{ matrix.config.os }} | |
| echo CMake options: ${{ matrix.config.cmake_options }} | |
| - name: Install dependencies | |
| run: sudo apt update && | |
| sudo apt install -y | |
| libfftw3-dev | |
| libnetcdf-dev | |
| libnetcdf-c++4-dev | |
| netcdf-bin | |
| python3 | |
| python3-pip | |
| python3-pytest | |
| python3-numpy | |
| python3-scipy | |
| lcov | |
| openmpi-bin | |
| libopenmpi-dev | |
| petsc-dev | |
| slepc-dev | |
| liblapack-dev | |
| libparpack2-dev | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install pip packages | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| python -m pip install -r requirements.txt | |
| - name: Cache SUNDIALS build | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/local | |
| key: bout-sundials-${{ matrix.config.os }}${{ matrix.config.build_petsc }} | |
| - name: Build SUNDIALS | |
| run: ./.build_sundials_for_ci.sh | |
| - name: Build PETSc | |
| run: BUILD_PETSC=${{ matrix.config.build_petsc }} ./.build_petsc_for_ci.sh ${{ matrix.config.build_petsc_branch }} | |
| - name: Build ADIOS2 | |
| run: BUILD_ADIOS2=${{ matrix.config.build_adios2 }} ./.build_adios2_for_ci.sh | |
| - name: Build BOUT++ | |
| run: UNIT_ONLY=${{ matrix.config.unit_only }} ./.ci_with_cmake.sh ${{ matrix.config.cmake_options }} | |
| - name: Capture coverage | |
| if: ${{ matrix.config.name == 'Coverage' }} | |
| # Explicitly run the coverage capture target, because | |
| # ci_script.sh also does the upload, and we're going to do | |
| # that ourselves in the next step | |
| run: | | |
| # Ensure that there is a corresponding .gcda file for every .gcno file | |
| # This is to try and make the coverage report slightly more accurate | |
| # It still won't include, e.g. any solvers we don't build with though | |
| find . -name "*.gcno" -exec sh -c 'touch -a "${1%.gcno}.gcda"' _ {} \; | |
| make -C build code-coverage-capture | |
| - name: Upload coverage | |
| if: ${{ matrix.config.name == 'Coverage' }} | |
| uses: codecov/codecov-action@v4 | |
| Fedora: | |
| # This is its own job as it doesn't use most of the steps of the | |
| # standard_tests | |
| timeout-minutes: 60 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Build Fedora rawhide | |
| run: ./.ci_fedora.sh setup openmpi rawhide | |
| shell: bash | |
| env: | |
| TRAVIS_BUILD_DIR: ${{ github.workspace }} | |
| CUDA: | |
| timeout-minutes: 60 | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/ggeorgakoudis/boutdev-cuda:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Build minimal CUDA 12.2 @ GCC9.4.0 @ Ubuntu 20.04 | |
| run: | | |
| . /spack/share/spack/setup-env.sh | |
| spack env activate -p /spack-env | |
| git config --global --add safe.directory $GITHUB_WORKSPACE | |
| rm -rf build | |
| cmake -S $GITHUB_WORKSPACE -B build \ | |
| -DCMAKE_C_COMPILER=gcc \ | |
| -DCMAKE_CXX_COMPILER=g++ \ | |
| -DBOUT_ENABLE_RAJA=on \ | |
| -DBOUT_ENABLE_UMPIRE=on \ | |
| -DBOUT_ENABLE_CUDA=on \ | |
| -DCMAKE_CUDA_ARCHITECTURES=80 \ | |
| -DCUDA_ARCH=compute_80,code=sm_80 \ | |
| -DBOUT_ENABLE_WARNINGS=off \ | |
| -DBOUT_USE_SYSTEM_FMT=on | |
| cd build | |
| make -j 4 |