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Update README.md
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add instructions for model inference and visualization
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rexxxx1234 authored Jul 13, 2023
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Expand Up @@ -50,6 +50,14 @@ To fine-tune the AGILE pre-trained model for ionizable lipid prediction on the s
$ python finetune.py config_finetune.yaml
```

### Inference and visualization

The current 'infer_vis.py' will perform model inference with the AGILE fine-tuned model on the fine-tuning dataset. To perform inference on new data, you can modify the config file to specify the new data path.

```
$ python infer_vis.py <folder name of the fine-tuned model>
```

## Citing AGILE

```bibtex
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