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to extract gene embeddings, I was trying to use three models: model_types = ['whole_human', 'human_brain', 'human_blood'], which means, I have 3 vocab.json files
I briefly checked the files themselves by looking at their last few lines:
(1) for whole_human:
I was assuming they would return the consistent order with their corresponding json file order,
but both (1) and (2) return the identical gene2idx which matches the (1) whole_human's gene order:
I was just confused why the order of (2) is not consistent with its own json file but identical to (1)'s? Did I miss something? Just wanted to make sure the order of gene index of each model's extracted gene embeddings is correct.
Thanks!
The text was updated successfully, but these errors were encountered:
to extract gene embeddings, I was trying to use three models:
model_types = ['whole_human', 'human_brain', 'human_blood']
, which means, I have 3vocab.json
filesI briefly checked the files themselves by looking at their last few lines:
(1) for whole_human:
(2) for human_brain:
(3) for human_blood:
when I checked the
gene2idx
usingI was assuming they would return the consistent order with their corresponding json file order,
but both (1) and (2) return the identical
gene2idx
which matches the (1) whole_human's gene order:while (3) is consistent with its own json file:
I was just confused why the order of (2) is not consistent with its own json file but identical to (1)'s? Did I miss something? Just wanted to make sure the order of gene index of each model's extracted gene embeddings is correct.
Thanks!
The text was updated successfully, but these errors were encountered: