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In what form are these datasets, since they contain float values I guess they are not raw counts?
Have these 3 datasets already been normalized and logarithmized, thus only need to be binned?
The text was updated successfully, but these errors were encountered:
@subercui
I'm asking because if you preprocessed the datasets with scanpys normalize_total and log1p, applying numpys expm1 (reverse of log1p) and summing the values for each cell should result in a normalization constant, which is not the case.
Thus I'm wondering if I'm missing something.
Hi,
I'm trying to reproduce your cell type classification results on the Multilpe Sclerosis, Myeloid and hPancreas datasets.
In what form are these datasets, since they contain float values I guess they are not raw counts?
Have these 3 datasets already been normalized and logarithmized, thus only need to be binned?
The text was updated successfully, but these errors were encountered: