Remove SpikeData (#87)

* Migrate all analysis to separate spikedata package * Get basic analysis dataloader tests passing again * Add `spikedata` dependency via git URL
braingeneers · Oct 11, 2024 · b14354a · b14354a
1 parent 43b6095
commit b14354a
Show file tree

Hide file tree

Showing 5 changed files with 198 additions and 1,784 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -42,11 +42,11 @@ dependencies = [
     'numpy',
     'paho-mqtt>=2',
     'pandas',
-    'powerlaw',
     'redis',
     'requests',
     'schedule',
-    'scipy>=1.10.0',
+    'scipy',
+    'spikedata @ git+https://github.com/braingeneers/SpikeData',
     'tenacity',
     "typing_extensions>=4.6; python_version<'3.11'",
     'diskcache',

diff --git a/src/braingeneers/analysis/__init__.py b/src/braingeneers/analysis/__init__.py
@@ -1 +1,7 @@
-from braingeneers.analysis.analysis import *
+from spikedata import (DCCResult, SpikeData, best_effort_sample,
+                       burst_detection, cumulative_moving_average,
+                       fano_factors, pearson, population_firing_rate,
+                       randomize_raster, spike_time_tiling)
+
+from braingeneers.analysis.analysis import (NeuronAttributes, filter,
+                                            load_spike_data, read_phy_files)