Find conda-installed binaries on Windows #331
Workflow file for this run
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| name: tests | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| tags: | ||
| - '*' | ||
| pull_request: | ||
| jobs: | ||
| linting: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: neuroinformatics-unit/actions/lint@v2 | ||
| manifest: | ||
| name: Check manifest | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: neuroinformatics-unit/actions/check_manifest@v2 | ||
| test: | ||
| needs: [linting, manifest] | ||
| name: ${{ matrix.os }} py${{ matrix.python-version }} | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| # Run across a mixture of Python versions and operating systems | ||
| include: | ||
| - os: ubuntu-latest | ||
| python-version: "3.11" | ||
| - os: macos-latest | ||
| python-version: "3.10" | ||
| - os: windows-latest | ||
| python-version: "3.9" | ||
| - os: ubuntu-latest | ||
| python-version: "3.8" | ||
| steps: | ||
| - name: Cache atlases | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: ~/.brainglobe | ||
| key: atlases | ||
| - uses: neuroinformatics-unit/actions/test@v2 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| test-with-conda: | ||
| needs: [linting, manifest] | ||
| name: Test conda-install, on ${{ matrix.os }} | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| - os: [ubuntu-latest, macos-latest, windows-latest] | ||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v3 | ||
| - name: Setup mamba environment with niftyreg install | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| init-shell: bash | ||
| environment-name: niftyreg-env | ||
| create-args: >- | ||
| python=3.11 | ||
| - name: Install package into environment | ||
| shell: bash | ||
| run: | | ||
| pip install .[dev] | ||
| - name: Run backend tests (no conda binaries) | ||
| shell: bash | ||
| run: | | ||
| pytest -v tests/tests/test_backend | ||
| - name: Install niftyreg with conda | ||
| shell: bash | ||
| run: | | ||
| mamba install niftyreg | ||
| - name: Run backend tests(conda binaries present) | ||
| shell: bash | ||
| run: | | ||
| pytest -v tests/tests/test_backend | ||
| build_sdist_wheel: | ||
| name: Build source distribution and wheel | ||
| needs: [test, test-with-conda] | ||
| if: github.event_name == 'push' && github.ref_type == 'tag' | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2 | ||
| deploy: | ||
| name: Deploy to PyPI | ||
| needs: [build_sdist_wheel] | ||
| if: github.event_name == 'push' && github.ref_type == 'tag' | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/download-artifact@v3 | ||
| with: | ||
| name: artifact | ||
| path: dist | ||
| - uses: pypa/[email protected] | ||
| with: | ||
| user: __token__ | ||
| password: ${{ secrets.TWINE_API_KEY }} | ||
