Code

Integrate GARDEL#731

Code

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chinmaychinara91 wants to merge 29 commits intobrainstorm-tools:masterbrainstorm-tools/brainstorm3:masterfrom chinmaychinara91:bst-gardel-integrationchinmaychinara91/brainstorm3:bst-gardel-integrationCopy head branch name to clipboard

+1,829-8,855

Commits

Commits on Jul 30, 2024

• add GARDEL as plugin

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• Create gardel_logo.png

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• Delete gardel_logo.png

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• Create gardel_logo.png

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• uniform code spacing

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• GUI for auto detection using GARDEL

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Commits on Jul 31, 2024

• initial implementation for GARDEL automation call

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• parse the coordinates for electrodes and contacts

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• Add GARDEL process logo

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Commits on Aug 1, 2024

• plot the contacts and update the list

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Commits on Aug 2, 2024

• update electrode structure with detected no of contacts

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Commits on Aug 4, 2024

• handle BST CT slice dimensions to match with GARDEL

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• GARDEL menu option, temporary folder, start external GARDEL tool

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Commits on Aug 5, 2024

• condition not required

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Commits on Aug 6, 2024

• Load CT file to brainstorm

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• Using LoadMri for loading the CT

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Commits on Aug 8, 2024

• Merge remote-tracking branch 'upstream/master' into bst-gardel-integration

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Commits on Sep 6, 2024

• copy raw MRI and CT files to anat folder

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• show GARDEL option in menu only when CT is imported

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• RawFilesDir variable to store path of the raw files

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Commits on Sep 11, 2024

• give option for storing Raw Unprocessed CT while importing

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• export_import_gardel renamed to seeg_contactid_gardel

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• Return back to Brainstorm after closing GARDEL_v2.3.7 app

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• Use bst_memory('LoadMri') to avoid reloading files if already in memory

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Commits on Oct 16, 2024

• test1: import GARDEL data back into BST

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• test1: call GARDEL with parameters

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• test1: bugfix; ignore display of raw CT as overlay

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Commits on Dec 8, 2024

• Merge remote-tracking branch 'upstream/master' into bst-gardel-integration

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• Revert "Merge remote-tracking branch 'upstream/master' into bst-gardel-integration"

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