Skip to content
View brentp's full-sized avatar

Sponsors

Organizations

@quinlan-lab

Block or report brentp

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Pinned Loading

  1. echtvar echtvar Public

    using all the bits for echt rapid variant annotation and filtering

    Rust 147 10

  2. mosdepth mosdepth Public

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 704 101

  3. slivar slivar Public

    genetic variant expressions, annotation, and filtering for great good.

    Nim 252 23

  4. somalier somalier Public

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim 272 38

  5. vcfanno vcfanno Public

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 367 56

  6. cyvcf2 cyvcf2 Public

    cython + htslib == fast VCF and BCF processing

    Cython 383 72