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.travis.yml
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.travis.yml
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language: python
env:
- PYTHON=2.6
- PYTHON=2.7
- PYTHON=3.3
- PYTHON=3.4
before_install:
- wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
- chmod +x miniconda.sh
- ./miniconda.sh -b -p /home/travis/miniconda
- export PATH=/home/travis/miniconda/bin:$PATH
install:
- conda update conda --yes
- conda create -n testenv --yes pip python=$PYTHON
- conda update conda --yes
- source activate testenv
- conda install --yes --file requirements.txt
#before_script:
# - conda install --yes -c r r r-rcolorbrewer
# - conda install --yes rpy2
# - conda install --yes -c https://conda.binstar.org/cgat cgat-r-deps cgat-bioconductor-deps bioconductor-biobase bioconductor-s4vectors bioconductor-godb bioconductor-genefilter
# - R --vanilla < R-combat.R
script:
- python combat.py
- python test.py