chore: rename CAT to cat-python for pypi to play nice

CHANGELOG.md

@@ -31,7 +31,7 @@ and this project adheres to [Semantic Versioning][].
 
 ### Fixed
 
-- Error in saving XlsxWriter [#2](https://github.com/brickmanlab/CAT/issues/2)
+- Error in saving XlsxWriter [#2](https://github.com/brickmanlab/cat-python/issues/2)
 
 ## [v1.0]
 

README.md

@@ -13,7 +13,7 @@ $ pip install cat-python
 ## Installation from source
 
 ```console
-$ pip install git+https://github.com/brickmanlab/CAT.git@main
+$ pip install git+https://github.com/brickmanlab/cat-python.git@master
 ```
 
 ## Running CAT
@@ -64,6 +64,6 @@ Please consider citing scANVI Explainer if you use in your research.
 [pypi-link]: https://pypi.org/project/cat-python
 [docs-badge]: https://readthedocs.org/projects/brickmanlabcat/badge/?version=latest
 [docs-link]: https://brickmanlabcat.readthedocs.io/en/latest/
-[build-badge]: https://github.com/brickmanlab/CAT/actions/workflows/build.yml/badge.svg
-[build-link]: https://github.com/brickmanlab/CAT/actions/workflows/build.yml
+[build-badge]: https://github.com/brickmanlab/cat-python/actions/workflows/build.yml/badge.svg
+[build-link]: https://github.com/brickmanlab/cat-python/actions/workflows/build.yml
 [10.1038/s41556-022-00923-x]: https://doi.org/10.1038/s41556-022-00923-x

pyproject.toml

@@ -3,7 +3,7 @@ build-backend = "hatchling.build"
 requires = ["hatchling"]
 
 [project]
-name = "CAT"
+name = "cat-python"
 version = "1.1.0"
 description = "Cluster Alignment Tool (CAT)"
 readme = "README.md"
@@ -49,9 +49,12 @@ doc = [
 ]
 
 [project.urls]
-Documentation = "https://CAT.readthedocs.io/"
-Source = "https://github.com/brickmanlab/CAT"
-Homepage = "https://github.com/brickmanlab/CAT"
+Documentation = "https://brickmanlabcat.readthedocs.io/"
+Source = "https://github.com/brickmanlab/cat-python"
+Homepage = "https://github.com/brickmanlab/cat-python"
 
 [tool.ruff]
 lint.ignore = ["E731"]
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/cat"]

src/cat/cli.py

@@ -117,7 +117,7 @@ def parse_args() -> argparse.Namespace:
     parser.add_argument(
         "--version",
         action="version",
-        version=f"CAT v{__version__}",
+        version=f"cat-python v{__version__}",
     )
 
     return parser.parse_args(args=None if sys.argv[1:] else ["--help"])

src/cat/constants.py

@@ -1,6 +1,6 @@
 from importlib.metadata import version
 
-__version__ = version("CAT")
+__version__ = version("cat-python")
 SIGMA = 1.6
 MIN_N_GENES = 20
 CLUSTER_FIELD = "cat_cluster"