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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.6k 579

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 953 366

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 972 353

Repositories

Showing 10 of 1260 repositories
  • TissueMosaic Public

    TBW

    broadinstitute/TissueMosaic’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Jul 4, 2024
  • gatk-sv Public

    A structural variation pipeline for short-read sequencing

    broadinstitute/gatk-sv’s past year of commit activity
    Python 160 BSD-3-Clause 71 67 18 Updated Jul 4, 2024
  • str-analysis Public

    Scripts and utilities related to analyzing short tandem repeats (STRs).

    broadinstitute/str-analysis’s past year of commit activity
    Python 27 MIT 5 1 0 Updated Jul 4, 2024
  • monorepo Public

    Compendium of tools for the Imaging Platform

    broadinstitute/monorepo’s past year of commit activity
    Python 6 0 8 2 Updated Jul 3, 2024
  • stp_segmentation_wdl Public
    broadinstitute/stp_segmentation_wdl’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 3, 2024
  • sam Public

    workbench identity and access management

    broadinstitute/sam’s past year of commit activity
    Scala 42 BSD-3-Clause 11 3 88 Updated Jul 3, 2024
  • juniper Public
    broadinstitute/juniper’s past year of commit activity
    Java 4 BSD-3-Clause 5 0 5 Updated Jul 3, 2024
  • ddp-angular Public

    Angular code for participant-facing pepper studies

    broadinstitute/ddp-angular’s past year of commit activity
    TypeScript 2 4 1 31 Updated Jul 4, 2024
  • sherlock Public

    DSP DevOps's deployment source-of-truth service

    broadinstitute/sherlock’s past year of commit activity
    Go 1 BSD-3-Clause 0 0 4 Updated Jul 3, 2024
  • depmap_omics Public

    What you need to process the Quarterly DepMap-Omics releases from Terra

    broadinstitute/depmap_omics’s past year of commit activity
    HTML 101 22 2 6 Updated Jul 3, 2024
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